Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Chymotrypsin-1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g921 g921.t12 TSS g921.t12 6865818 6865818
chr_3 g921 g921.t12 isoform g921.t12 6865841 6866908
chr_3 g921 g921.t12 exon g921.t12.exon1 6865841 6866007
chr_3 g921 g921.t12 exon g921.t12.exon2 6866074 6866164
chr_3 g921 g921.t12 cds g921.t12.CDS1 6866146 6866164
chr_3 g921 g921.t12 exon g921.t12.exon3 6866224 6866365
chr_3 g921 g921.t12 cds g921.t12.CDS2 6866224 6866365
chr_3 g921 g921.t12 exon g921.t12.exon4 6866419 6866782
chr_3 g921 g921.t12 cds g921.t12.CDS3 6866419 6866782
chr_3 g921 g921.t12 exon g921.t12.exon5 6866846 6866908
chr_3 g921 g921.t12 cds g921.t12.CDS4 6866846 6866908
chr_3 g921 g921.t12 TTS g921.t12 6866992 6866992

Sequences

>g921.t12 Gene=g921 Length=827
ATGATTCGTCAAGTGCTACTTTTTGCTTTGTTTGTTTCTGTGGCTTTTGCTGCACGTAAG
ATATAGAAAAATAAGAAGAAACAAAATCTAGAAATTTCTTTTCAAATTTGCAGCACAAAA
TAGAGAAAGAAGAATTGTTGGTGGAGTTGATAATGTCTTGGGTGAAATACCATGGGCTGT
AAGCTTAAGAACAATAGCAGGACTTCATTTTTGTACAGGATCAGTTCTCAATAATTGGTA
TGTTATCACATCAGGTTACTCATTGCATCGATGGACGAGGAGCATCAACAATTCATTTAG
TTTTGGGTAGAATCACACTTGATGGATTAACTGGAATGAATCGTCAAGGTTTTAGAGTTA
TTATTCATCCTGCATATGATGTTTCAACTCAAAATGCTGATGTTGGTTTAATTCAAGTAT
CAGTAATAATAACATTCAATGCAAATGTGCAAGCAATTTCATTAGGTGATACAATGATTG
GAACTGGAGTTTCTGCAAGAGTGAGTGGTTGGGGTTCAACAGAACAAGACTTTGGACCAA
CTTCGAATAATCTCAGATCACTTGATACAACAACACTTTCATTAAATGAATGTCAAGATA
GACATACATGGTGGAATGCTGAAAGAATAAATATGAACCATCTCTGTACAAATAATGGAG
TTAATGAAGGTTTCTGTATGACAGGAGCTGGTGGATCTCTTGTCAGTAATTCACAATTAA
TCGGTGTCGCTTCATGGAATGTACCTTGTGCTTTAGGCTATCCCGATGTTTATGTGAGAA
TATCAACATTCAGAACTTGGATAATGTCACAAATCGGTTCTCAATAA

>g921.t12 Gene=g921 Length=195
MLSHQVTHCIDGRGASTIHLVLGRITLDGLTGMNRQGFRVIIHPAYDVSTQNADVGLIQV
SVIITFNANVQAISLGDTMIGTGVSARVSGWGSTEQDFGPTSNNLRSLDTTTLSLNECQD
RHTWWNAERINMNHLCTNNGVNEGFCMTGAGGSLVSNSQLIGVASWNVPCALGYPDVYVR
ISTFRTWIMSQIGSQ

Protein features from InterProScan

Transcript Database ID Name Start End E.value
7 g921.t12 Gene3D G3DSA:2.40.10.10 - 8 188 0.000
6 g921.t12 Gene3D G3DSA:2.40.10.10 - 73 182 0.000
2 g921.t12 PANTHER PTHR24276 POLYSERASE-RELATED 7 192 0.000
3 g921.t12 PANTHER PTHR24276:SF78 AT20289P-RELATED 7 192 0.000
1 g921.t12 Pfam PF00089 Trypsin 7 188 0.000
8 g921.t12 ProSiteProfiles PS50240 Serine proteases, trypsin domain profile. 8 193 17.804
5 g921.t12 SMART SM00020 trypsin_2 8 188 0.000
4 g921.t12 SUPERFAMILY SSF50494 Trypsin-like serine proteases 8 193 0.000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0004252 serine-type endopeptidase activity MF
GO:0006508 proteolysis BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed