Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Chymotrypsin-1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g921 g921.t15 TSS g921.t15 6865818 6865818
chr_3 g921 g921.t15 isoform g921.t15 6865841 6867884
chr_3 g921 g921.t15 exon g921.t15.exon1 6865841 6865895
chr_3 g921 g921.t15 exon g921.t15.exon2 6865964 6866007
chr_3 g921 g921.t15 exon g921.t15.exon3 6866074 6866160
chr_3 g921 g921.t15 exon g921.t15.exon4 6866224 6866365
chr_3 g921 g921.t15 cds g921.t15.CDS1 6866301 6866365
chr_3 g921 g921.t15 exon g921.t15.exon5 6866419 6866782
chr_3 g921 g921.t15 cds g921.t15.CDS2 6866419 6866782
chr_3 g921 g921.t15 exon g921.t15.exon6 6866846 6866908
chr_3 g921 g921.t15 cds g921.t15.CDS3 6866846 6866908
chr_3 g921 g921.t15 exon g921.t15.exon7 6867868 6867884
chr_3 g921 g921.t15 TTS g921.t15 NA NA

Sequences

>g921.t15 Gene=g921 Length=772
ATGATTCGTCAAGTGCTACTTTTTGCTTTGTTTGTTTCTGTGGCTTTTGCTGCACAGAAA
GAAGAATTGTTGGTGGAGTTGATAATGTCTTGGGTGAAATACCATGGGCTGTAAGCTTAA
GAACAATAGCAGGACTTCATTTTTGTACAGGATCAGTTCTCAATAATTGGTATGTTATCA
CATCAGCTCATTGCATCGATGGACGAGGAGCATCAACAATTCATTTAGTTTTGGGTAGAA
TCACACTTGATGGATTAACTGGAATGAATCGTCAAGGTTTTAGAGTTATTATTCATCCTG
CATATGATGTTTCAACTCAAAATGCTGATGTTGGTTTAATTCAAGTATCAGTAATAATAA
CATTCAATGCAAATGTGCAAGCAATTTCATTAGGTGATACAATGATTGGAACTGGAGTTT
CTGCAAGAGTGAGTGGTTGGGGTTCAACAGAACAAGACTTTGGACCAACTTCGAATAATC
TCAGATCACTTGATACAACAACACTTTCATTAAATGAATGTCAAGATAGACATACATGGT
GGAATGCTGAAAGAATAAATATGAACCATCTCTGTACAAATAATGGAGTTAATGAAGGTT
TCTGTATGACAGGAGCTGGTGGATCTCTTGTCAGTAATTCACAATTAATCGGTGTCGCTT
CATGGAATGTACCTTGTGCTTTAGGCTATCCCGATGTTTATGTGAGAATATCAACATTCA
GAACTTGGATAATGTCACAAATCGGTTCTCAATAACTTTCCTGGCAATAAAG

>g921.t15 Gene=g921 Length=163
MNRQGFRVIIHPAYDVSTQNADVGLIQVSVIITFNANVQAISLGDTMIGTGVSARVSGWG
STEQDFGPTSNNLRSLDTTTLSLNECQDRHTWWNAERINMNHLCTNNGVNEGFCMTGAGG
SLVSNSQLIGVASWNVPCALGYPDVYVRISTFRTWIMSQIGSQ

Protein features from InterProScan

Transcript Database ID Name Start End E.value
7 g921.t15 Gene3D G3DSA:2.40.10.10 - 7 156 0.0000000
6 g921.t15 Gene3D G3DSA:2.40.10.10 - 41 150 0.0000000
2 g921.t15 PANTHER PTHR24276 POLYSERASE-RELATED 8 160 0.0000000
3 g921.t15 PANTHER PTHR24276:SF78 AT20289P-RELATED 8 160 0.0000000
1 g921.t15 Pfam PF00089 Trypsin 7 156 0.0000000
8 g921.t15 ProSiteProfiles PS50240 Serine proteases, trypsin domain profile. 1 161 16.3240000
5 g921.t15 SMART SM00020 trypsin_2 1 156 0.0000002
4 g921.t15 SUPERFAMILY SSF50494 Trypsin-like serine proteases 6 161 0.0000000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0004252 serine-type endopeptidase activity MF
GO:0006508 proteolysis BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed