General information for g921.t16
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g921 is located on chr_3: 6866430..6867884 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g921 | g921.t16 | TSS | g921.t16 | 6865818 | 6865818 |
| chr_3 | g921 | g921.t16 | isoform | g921.t16 | 6866430 | 6866908 |
| chr_3 | g921 | g921.t16 | exon | g921.t16.exon1 | 6866430 | 6866782 |
| chr_3 | g921 | g921.t16 | cds | g921.t16.CDS1 | 6866492 | 6866782 |
| chr_3 | g921 | g921.t16 | exon | g921.t16.exon2 | 6866846 | 6866908 |
| chr_3 | g921 | g921.t16 | cds | g921.t16.CDS2 | 6866846 | 6866908 |
| chr_3 | g921 | g921.t16 | TTS | g921.t16 | 6866992 | 6866992 |
Sequences
>g921.t16 Gene=g921 Length=416
TTCAAGTATCAGTAATAATAACATTCAATGCAAATGTGCAAGCAATTTCATTAGGTGATA
CAATGATTGGAACTGGAGTTTCTGCAAGAGTGAGTGGTTGGGGTTCAACAGAACAAGACT
TTGGACCAACTTCGAATAATCTCAGATCACTTGATACAACAACACTTTCATTAAATGAAT
GTCAAGATAGACATACATGGTGGAATGCTGAAAGAATAAATATGAACCATCTCTGTACAA
ATAATGGAGTTAATGAAGGTTTCTGTATGACAGGAGCTGGTGGATCTCTTGTCAGTAATT
CACAATTAATCGGTGTCGCTTCATGGAATGTACCTTGTGCTTTAGGCTATCCCGATGTTT
ATGTGAGAATATCAACATTCAGAACTTGGATAATGTCACAAATCGGTTCTCAATAA
>g921.t16 Gene=g921 Length=117
MIGTGVSARVSGWGSTEQDFGPTSNNLRSLDTTTLSLNECQDRHTWWNAERINMNHLCTN
NGVNEGFCMTGAGGSLVSNSQLIGVASWNVPCALGYPDVYVRISTFRTWIMSQIGSQ
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g921.t16 | Gene3D | G3DSA:2.40.10.10 | - | 2 | 112 | 5.3E-23 |
| 5 | g921.t16 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - |
| 2 | g921.t16 | PANTHER | PTHR24276 | POLYSERASE-RELATED | 5 | 114 | 2.6E-20 |
| 3 | g921.t16 | PANTHER | PTHR24276:SF78 | AT20289P-RELATED | 5 | 114 | 2.6E-20 |
| 1 | g921.t16 | Pfam | PF00089 | Trypsin | 5 | 110 | 3.4E-17 |
| 7 | g921.t16 | ProSiteProfiles | PS50240 | Serine proteases, trypsin domain profile. | 1 | 115 | 12.536 |
| 4 | g921.t16 | SUPERFAMILY | SSF50494 | Trypsin-like serine proteases | 4 | 115 | 1.15E-23 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0004252 | serine-type endopeptidase activity | MF |
| GO:0006508 | proteolysis | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed