Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Chymotrypsin-1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g921 g921.t9 TSS g921.t9 6865818 6865818
chr_3 g921 g921.t9 isoform g921.t9 6865841 6866908
chr_3 g921 g921.t9 exon g921.t9.exon1 6865841 6865895
chr_3 g921 g921.t9 cds g921.t9.CDS1 6865841 6865895
chr_3 g921 g921.t9 exon g921.t9.exon2 6865954 6866007
chr_3 g921 g921.t9 cds g921.t9.CDS2 6865954 6866007
chr_3 g921 g921.t9 exon g921.t9.exon3 6866074 6866160
chr_3 g921 g921.t9 cds g921.t9.CDS3 6866074 6866160
chr_3 g921 g921.t9 exon g921.t9.exon4 6866224 6866365
chr_3 g921 g921.t9 cds g921.t9.CDS4 6866224 6866365
chr_3 g921 g921.t9 exon g921.t9.exon5 6866419 6866908
chr_3 g921 g921.t9 cds g921.t9.CDS5 6866419 6866845
chr_3 g921 g921.t9 TTS g921.t9 6866992 6866992

Sequences

>g921.t9 Gene=g921 Length=828
ATGATTCGTCAAGTGCTACTTTTTGCTTTGTTTGTTTCTGTGGCTTTTGCTGCACCACAA
AATAGAGAAAGAAGAATTGTTGGTGGAGTTGATAATGTCTTGGGTGAAATACCATGGGCT
GTAAGCTTAAGAACAATAGCAGGACTTCATTTTTGTACAGGATCAGTTCTCAATAATTGG
TATGTTATCACATCAGCTCATTGCATCGATGGACGAGGAGCATCAACAATTCATTTAGTT
TTGGGTAGAATCACACTTGATGGATTAACTGGAATGAATCGTCAAGGTTTTAGAGTTATT
ATTCATCCTGCATATGATGTTTCAACTCAAAATGCTGATGTTGGTTTAATTCAAGTATCA
GTAATAATAACATTCAATGCAAATGTGCAAGCAATTTCATTAGGTGATACAATGATTGGA
ACTGGAGTTTCTGCAAGAGTGAGTGGTTGGGGTTCAACAGAACAAGACTTTGGACCAACT
TCGAATAATCTCAGATCACTTGATACAACAACACTTTCATTAAATGAATGTCAAGATAGA
CATACATGGTGGAATGCTGAAAGAATAAATATGAACCATCTCTGTACAAATAATGGAGTT
AATGAAGGTTTCTGTATGACAGGAGCTGGTGGATCTCTTGTCAGTAATTCACAATTAATC
GGTGTCGCTTCATGGAATGTACCTTGTGCTTTAGGCTATCCCGTAAGTTTAACTTTCCTT
ATATGGACAAAAATTATCTTATCAAATTTTTCTAATTTTATCTAGGATGTTTATGTGAGA
ATATCAACATTCAGAACTTGGATAATGTCACAAATCGGTTCTCAATAA

>g921.t9 Gene=g921 Length=254
MIRQVLLFALFVSVAFAAPQNRERRIVGGVDNVLGEIPWAVSLRTIAGLHFCTGSVLNNW
YVITSAHCIDGRGASTIHLVLGRITLDGLTGMNRQGFRVIIHPAYDVSTQNADVGLIQVS
VIITFNANVQAISLGDTMIGTGVSARVSGWGSTEQDFGPTSNNLRSLDTTTLSLNECQDR
HTWWNAERINMNHLCTNNGVNEGFCMTGAGGSLVSNSQLIGVASWNVPCALGYPVSLTFL
IWTKIILSNFSNFI

Protein features from InterProScan

Transcript Database ID Name Start End E.value
14 g921.t9 CDD cd00190 Tryp_SPc 26 234 3.4364E-43
8 g921.t9 Gene3D G3DSA:2.40.10.10 - 26 233 2.8E-41
7 g921.t9 Gene3D G3DSA:2.40.10.10 - 38 128 2.8E-41
2 g921.t9 PANTHER PTHR24276 POLYSERASE-RELATED 6 234 1.5E-41
3 g921.t9 PANTHER PTHR24276:SF78 AT20289P-RELATED 6 234 1.5E-41
1 g921.t9 Pfam PF00089 Trypsin 26 232 4.8E-35
10 g921.t9 Phobius SIGNAL_PEPTIDE Signal peptide region 1 17 -
11 g921.t9 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide. 1 4 -
12 g921.t9 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide. 5 12 -
13 g921.t9 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide. 13 17 -
9 g921.t9 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 18 254 -
17 g921.t9 ProSiteProfiles PS50240 Serine proteases, trypsin domain profile. 26 254 23.148
16 g921.t9 SMART SM00020 trypsin_2 25 241 2.4E-25
4 g921.t9 SUPERFAMILY SSF50494 Trypsin-like serine proteases 6 235 8.01E-48
6 g921.t9 SignalP_EUK SignalP-noTM SignalP-noTM 1 17 -
15 g921.t9 SignalP_GRAM_NEGATIVE SignalP-noTM SignalP-noTM 1 17 -
5 g921.t9 SignalP_GRAM_POSITIVE SignalP-TM SignalP-TM 1 17 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0004252 serine-type endopeptidase activity MF
GO:0006508 proteolysis BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed