General information for g9216.t10
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g9216 is located on chr_1: 863390..883339 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9216 | g9216.t10 | TTS | g9216.t10 | 855348 | 855348 |
| chr_1 | g9216 | g9216.t10 | isoform | g9216.t10 | 856363 | 859275 |
| chr_1 | g9216 | g9216.t10 | exon | g9216.t10.exon1 | 856363 | 856473 |
| chr_1 | g9216 | g9216.t10 | cds | g9216.t10.CDS1 | 856363 | 856473 |
| chr_1 | g9216 | g9216.t10 | exon | g9216.t10.exon2 | 856706 | 856848 |
| chr_1 | g9216 | g9216.t10 | cds | g9216.t10.CDS2 | 856706 | 856848 |
| chr_1 | g9216 | g9216.t10 | exon | g9216.t10.exon3 | 856907 | 857075 |
| chr_1 | g9216 | g9216.t10 | cds | g9216.t10.CDS3 | 856907 | 856994 |
| chr_1 | g9216 | g9216.t10 | exon | g9216.t10.exon4 | 859141 | 859275 |
| chr_1 | g9216 | g9216.t10 | TSS | g9216.t10 | NA | NA |
Sequences
>g9216.t10 Gene=g9216 Length=558
GTAATTGATCCAATCAACAAGCTAATAGACACGGTTGAATTTGATGCGGTCTTTTATTCA
CTCGATTGGCATCCGGCTGATCACGTATCATTCATTGACAACATTAAGCAGCGTCCAATT
CATCCAACGAGTCCTATAGTAGAAAATTCTATTAAAGTATATAAGGGCACTAATCCAGAA
GTTGATTCTTATTCTGTCTTTTGGGACAATAAGAAAATGTCAGATACTTCTCTATGTGGA
CAATTGAAGCAAAAAGGCATTACTGATGTATATGTTTGTGGTCTTGCATATGATGTTTGT
GTTGGAGCTACAGCAACAGATGCCCTTTCAGCTGGATATCGTACAATTCTTATTGATGAT
TGTTGCCGTGGTGTAGATCTACAGGACATTGAAACCACAAAAGAGACTGTCCTCAATAAT
CATGGCGTCATTGTTCATTCAAAAGAGGTGAAAGCAATGGTTGAAGGACGTGATCGCAGA
CCCGAACTCGGCTTCAAACTCGCAATGGAGTTGAAAAATGCGGAAAATGAAAACAAACGT
GGTCGAAGGCAGATTTAA
>g9216.t10 Gene=g9216 Length=113
MSDTSLCGQLKQKGITDVYVCGLAYDVCVGATATDALSAGYRTILIDDCCRGVDLQDIET
TKETVLNNHGVIVHSKEVKAMVEGRDRRPELGFKLAMELKNAENENKRGRRQI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g9216.t10 | Gene3D | G3DSA:3.40.50.850 | - | 1 | 104 | 0 |
| 2 | g9216.t10 | PANTHER | PTHR11080 | PYRAZINAMIDASE/NICOTINAMIDASE | 2 | 101 | 0 |
| 1 | g9216.t10 | Pfam | PF00857 | Isochorismatase family | 2 | 60 | 0 |
| 3 | g9216.t10 | SUPERFAMILY | SSF52499 | Isochorismatase-like hydrolases | 3 | 99 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
