General information for g9216.t11
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g9216 is located on chr_1: 863390..883339 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9216 | g9216.t11 | isoform | g9216.t11 | 863390 | 867626 |
| chr_1 | g9216 | g9216.t11 | exon | g9216.t11.exon1 | 863390 | 863851 |
| chr_1 | g9216 | g9216.t11 | TTS | g9216.t11 | 863394 | 863394 |
| chr_1 | g9216 | g9216.t11 | cds | g9216.t11.CDS1 | 863687 | 863851 |
| chr_1 | g9216 | g9216.t11 | exon | g9216.t11.exon2 | 865492 | 865544 |
| chr_1 | g9216 | g9216.t11 | cds | g9216.t11.CDS2 | 865492 | 865544 |
| chr_1 | g9216 | g9216.t11 | exon | g9216.t11.exon3 | 867493 | 867626 |
| chr_1 | g9216 | g9216.t11 | cds | g9216.t11.CDS3 | 867493 | 867523 |
| chr_1 | g9216 | g9216.t11 | TSS | g9216.t11 | NA | NA |
Sequences
>g9216.t11 Gene=g9216 Length=649
TGACGACCGCTTATCTTTGGCAGAGTTCACGCTCATCTGTCGAGCATTGTTTCGCAATGA
TAAAGGACATATTTATATAGTACCATCGGATCAGTTGGAGCAAATGTTTGCCGTATTTGA
TAAAAATCAGGATGGCTATATAGATCGTGATGAATTTACATTCTGTTGGAATTCATGGAT
CAAAACAATTGTGAGACCAATAAATGCTTATCTCGTTGTCGATGTTCAAAATGACTTCAT
AAGTGGTTCTTTAAACATCAGCAATTGCTCTGCACAACAGAATGGCATCGAGGTGAGTGA
ATACAAAAAGAGGAAGCTATTAAATGTTCATTCCTCTTATCTTTTGCAATAGATTGAAAG
TTTATATCTTTTTCTTTATCTCTTTATGTTTACTCATAAATGCTCTCTCTTTTCTGGCCC
TTGTTGTTTGCTTTCCTTTCCGTTCGTTTTAATTTCCGGGCATTTCTTTTTTCTTACCCT
TGTCTAGGTTTCTATTGAATGAACAGACAAGCAATATAAAATTTCTATCTTTCTTTTTGT
TGCTTGCAAATGCTGATGATAAAGTTTACAGCCATTATCGGGTTGCTATCAACTCTAAAA
GATCCTCACTCCAAACAAATTTAATTGAAATGAGAAAAATGTACCAAAA
>g9216.t11 Gene=g9216 Length=82
MFAVFDKNQDGYIDRDEFTFCWNSWIKTIVRPINAYLVVDVQNDFISGSLNISNCSAQQN
GIEVSEYKKRKLLNVHSSYLLQ
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g9216.t11 | Gene3D | G3DSA:1.10.238.10 | - | 1 | 26 | 3.1E-6 |
| 1 | g9216.t11 | Pfam | PF00036 | EF hand | 1 | 22 | 4.4E-7 |
| 3 | g9216.t11 | ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 6 | 18 | - |
| 5 | g9216.t11 | ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 1 | 28 | 11.445 |
| 2 | g9216.t11 | SUPERFAMILY | SSF47473 | EF-hand | 1 | 32 | 1.3E-6 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005509 | calcium ion binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed