General information for g9216.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g9216 is located on chr_1: 863390..883339 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9216 | g9216.t4 | isoform | g9216.t4 | 855333 | 857263 |
| chr_1 | g9216 | g9216.t4 | exon | g9216.t4.exon1 | 855333 | 856473 |
| chr_1 | g9216 | g9216.t4 | TTS | g9216.t4 | 855348 | 855348 |
| chr_1 | g9216 | g9216.t4 | cds | g9216.t4.CDS1 | 856363 | 856473 |
| chr_1 | g9216 | g9216.t4 | exon | g9216.t4.exon2 | 856706 | 856848 |
| chr_1 | g9216 | g9216.t4 | cds | g9216.t4.CDS2 | 856706 | 856848 |
| chr_1 | g9216 | g9216.t4 | exon | g9216.t4.exon3 | 856907 | 857075 |
| chr_1 | g9216 | g9216.t4 | cds | g9216.t4.CDS3 | 856907 | 856994 |
| chr_1 | g9216 | g9216.t4 | exon | g9216.t4.exon4 | 857195 | 857263 |
| chr_1 | g9216 | g9216.t4 | TSS | g9216.t4 | NA | NA |
Sequences
>g9216.t4 Gene=g9216 Length=1522
AGACAGCGATTATGGCCGAGACATTGTGTCCAAGATACATGGGGAAGTGAATTGCATAAA
GACCTTAAGATAGTAGAAAATTCTATTAAAGTATATAAGGGCACTAATCCAGAAGTTGAT
TCTTATTCTGTCTTTTGGGACAATAAGAAAATGTCAGATACTTCTCTATGTGGACAATTG
AAGCAAAAAGGCATTACTGATGTATATGTTTGTGGTCTTGCATATGATGTTTGTGTTGGA
GCTACAGCAACAGATGCCCTTTCAGCTGGATATCGTACAATTCTTATTGATGATTGTTGC
CGTGGTGTAGATCTACAGGACATTGAAACCACAAAAGAGACTGTCCTCAATAATCATGGC
GTCATTGTTCATTCAAAAGAGGTGAAAGCAATGGTTGAAGGACGTGATCGCAGACCCGAA
CTCGGCTTCAAACTCGCAATGGAGTTGAAAAATGCGGAAAATGAAAACAAACGTGGTCGA
AGGCAGATTTAAGCAACAGCAGTAGCAGCCAAAAGTAGAAAATTTCCTCGCGCTACTTCT
CCCTTCATAATGACACTTTTTTTCTCTTCTTCCGCTCTATATGTTAAGCATTCATGTTAT
TTTGTAGCAATACTTGTATACCCTAGAGTAGTCGCCGCCACTTTCTCTTGCTCTCACAAT
TTATGTGCATTTTTGATTCTTTTTTTATTTCCTTCTTTTTCTCTTGCCTCTGCAACTTAT
GTAGATTTTTAAGTGCTCAAGGATTTTATGCGGAAGAACAAAAAATACTTAAATATTATA
TGCATAATGAGAGTAAGTCGAAGTGAATGTAGATCTTGAAAAAAATGCAGAATTTTTTAT
GTAAATTTAATTTTCACAACTGAAATTAACAAAAGTTTACTTACTGACATTTCCATAAAA
TGAATTAATACCAATTATTAGTTTTATGCTCTAAAATTTACTATACATTCCAAATTTTAA
TTCCTTTAGTTGCATAAAAAGTGTTTTCATTATTAAAATTAAAGAGAATGCAATGAACAA
ATTTAATATTCGTGTTTACTTGTATAGCAACTAAATTACATAGTTTTCTGTTTTATTTAC
TTGATTAAACATAAATTGCAAGAAAATTAACTTTTAAGTGCTTTCAATGATGATGAAGAA
GAAGATTTAATATTTACTTAATATTACTAACAATAATGATGATGATAGAATAATAATGTA
ATAAAGAGAATGGAGATGCACTTTTGAATGTTGAGAGACAATTTCACTTGACGTTTATCA
CTTTAATTATATCTTATTCTCTCAGTGTTTGTACTTACACTCTCCTATCATCATCATCTT
TTTTTCTTTCTTCATCATATTTTAAACATTCTTATTATTTTTATTAAAAGCTAAAAAATA
TTAAAAGTTGATATCTCGATGTAAAAATAATAAAAAAATGTACTTAGAATGATTAAAAAA
GGGTTAAATGACATCATTGTATAAAATTAAAGCTTTAAATTCAAAATAAAAAAAAATATT
GAGGAAAACACAAGAAATGCAG
>g9216.t4 Gene=g9216 Length=113
MSDTSLCGQLKQKGITDVYVCGLAYDVCVGATATDALSAGYRTILIDDCCRGVDLQDIET
TKETVLNNHGVIVHSKEVKAMVEGRDRRPELGFKLAMELKNAENENKRGRRQI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g9216.t4 | Coils | Coil | Coil | 99 | 113 | - |
| 4 | g9216.t4 | Gene3D | G3DSA:3.40.50.850 | - | 1 | 104 | 7.6E-24 |
| 2 | g9216.t4 | PANTHER | PTHR11080 | PYRAZINAMIDASE/NICOTINAMIDASE | 2 | 101 | 3.9E-23 |
| 1 | g9216.t4 | Pfam | PF00857 | Isochorismatase family | 2 | 60 | 3.8E-14 |
| 3 | g9216.t4 | SUPERFAMILY | SSF52499 | Isochorismatase-like hydrolases | 3 | 99 | 2.88E-21 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
