Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g9216 g9216.t5 isoform g9216.t5 855333 857495
chr_1 g9216 g9216.t5 exon g9216.t5.exon1 855333 856473
chr_1 g9216 g9216.t5 TTS g9216.t5 855348 855348
chr_1 g9216 g9216.t5 cds g9216.t5.CDS1 856363 856473
chr_1 g9216 g9216.t5 exon g9216.t5.exon2 856706 856848
chr_1 g9216 g9216.t5 cds g9216.t5.CDS2 856706 856848
chr_1 g9216 g9216.t5 exon g9216.t5.exon3 856907 857075
chr_1 g9216 g9216.t5 cds g9216.t5.CDS3 856907 856994
chr_1 g9216 g9216.t5 exon g9216.t5.exon4 857195 857261
chr_1 g9216 g9216.t5 exon g9216.t5.exon5 857430 857495
chr_1 g9216 g9216.t5 TSS g9216.t5 NA NA

Sequences

>g9216.t5 Gene=g9216 Length=1586
TTAAATGCTGACAATGCAGCAGTTTATGATACTGTAATTTTTGCTGGACCTCCTCCTATG
AGGAATACAGCGATTATGGCCGAGACATTGTGTCCAAGATACATGGGGAAGTGAATTGCA
TAAAGACCTTAAGATAGTAGAAAATTCTATTAAAGTATATAAGGGCACTAATCCAGAAGT
TGATTCTTATTCTGTCTTTTGGGACAATAAGAAAATGTCAGATACTTCTCTATGTGGACA
ATTGAAGCAAAAAGGCATTACTGATGTATATGTTTGTGGTCTTGCATATGATGTTTGTGT
TGGAGCTACAGCAACAGATGCCCTTTCAGCTGGATATCGTACAATTCTTATTGATGATTG
TTGCCGTGGTGTAGATCTACAGGACATTGAAACCACAAAAGAGACTGTCCTCAATAATCA
TGGCGTCATTGTTCATTCAAAAGAGGTGAAAGCAATGGTTGAAGGACGTGATCGCAGACC
CGAACTCGGCTTCAAACTCGCAATGGAGTTGAAAAATGCGGAAAATGAAAACAAACGTGG
TCGAAGGCAGATTTAAGCAACAGCAGTAGCAGCCAAAAGTAGAAAATTTCCTCGCGCTAC
TTCTCCCTTCATAATGACACTTTTTTTCTCTTCTTCCGCTCTATATGTTAAGCATTCATG
TTATTTTGTAGCAATACTTGTATACCCTAGAGTAGTCGCCGCCACTTTCTCTTGCTCTCA
CAATTTATGTGCATTTTTGATTCTTTTTTTATTTCCTTCTTTTTCTCTTGCCTCTGCAAC
TTATGTAGATTTTTAAGTGCTCAAGGATTTTATGCGGAAGAACAAAAAATACTTAAATAT
TATATGCATAATGAGAGTAAGTCGAAGTGAATGTAGATCTTGAAAAAAATGCAGAATTTT
TTATGTAAATTTAATTTTCACAACTGAAATTAACAAAAGTTTACTTACTGACATTTCCAT
AAAATGAATTAATACCAATTATTAGTTTTATGCTCTAAAATTTACTATACATTCCAAATT
TTAATTCCTTTAGTTGCATAAAAAGTGTTTTCATTATTAAAATTAAAGAGAATGCAATGA
ACAAATTTAATATTCGTGTTTACTTGTATAGCAACTAAATTACATAGTTTTCTGTTTTAT
TTACTTGATTAAACATAAATTGCAAGAAAATTAACTTTTAAGTGCTTTCAATGATGATGA
AGAAGAAGATTTAATATTTACTTAATATTACTAACAATAATGATGATGATAGAATAATAA
TGTAATAAAGAGAATGGAGATGCACTTTTGAATGTTGAGAGACAATTTCACTTGACGTTT
ATCACTTTAATTATATCTTATTCTCTCAGTGTTTGTACTTACACTCTCCTATCATCATCA
TCTTTTTTTCTTTCTTCATCATATTTTAAACATTCTTATTATTTTTATTAAAAGCTAAAA
AATATTAAAAGTTGATATCTCGATGTAAAAATAATAAAAAAATGTACTTAGAATGATTAA
AAAAGGGTTAAATGACATCATTGTATAAAATTAAAGCTTTAAATTCAAAATAAAAAAAAA
TATTGAGGAAAACACAAGAAATGCAG

>g9216.t5 Gene=g9216 Length=113
MSDTSLCGQLKQKGITDVYVCGLAYDVCVGATATDALSAGYRTILIDDCCRGVDLQDIET
TKETVLNNHGVIVHSKEVKAMVEGRDRRPELGFKLAMELKNAENENKRGRRQI

Protein features from InterProScan

Transcript Database ID Name Start End E.value
4 g9216.t5 Gene3D G3DSA:3.40.50.850 - 1 104 0
2 g9216.t5 PANTHER PTHR11080 PYRAZINAMIDASE/NICOTINAMIDASE 2 101 0
1 g9216.t5 Pfam PF00857 Isochorismatase family 2 60 0
3 g9216.t5 SUPERFAMILY SSF52499 Isochorismatase-like hydrolases 3 99 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed