General information for g9216.t8
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Nicotinamidase.
Parent gene
- The parent gene g9216 is located on chr_1: 863390..883339 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9216 | g9216.t8 | isoform | g9216.t8 | 855333 | 867626 |
| chr_1 | g9216 | g9216.t8 | exon | g9216.t8.exon1 | 855333 | 856473 |
| chr_1 | g9216 | g9216.t8 | TTS | g9216.t8 | 855348 | 855348 |
| chr_1 | g9216 | g9216.t8 | cds | g9216.t8.CDS1 | 856363 | 856473 |
| chr_1 | g9216 | g9216.t8 | exon | g9216.t8.exon2 | 856706 | 856848 |
| chr_1 | g9216 | g9216.t8 | cds | g9216.t8.CDS2 | 856706 | 856848 |
| chr_1 | g9216 | g9216.t8 | exon | g9216.t8.exon3 | 856907 | 857075 |
| chr_1 | g9216 | g9216.t8 | cds | g9216.t8.CDS3 | 856907 | 857075 |
| chr_1 | g9216 | g9216.t8 | exon | g9216.t8.exon4 | 857195 | 857257 |
| chr_1 | g9216 | g9216.t8 | cds | g9216.t8.CDS4 | 857195 | 857257 |
| chr_1 | g9216 | g9216.t8 | exon | g9216.t8.exon5 | 857430 | 857495 |
| chr_1 | g9216 | g9216.t8 | cds | g9216.t8.CDS5 | 857430 | 857438 |
| chr_1 | g9216 | g9216.t8 | exon | g9216.t8.exon6 | 859141 | 859275 |
| chr_1 | g9216 | g9216.t8 | exon | g9216.t8.exon7 | 863747 | 863851 |
| chr_1 | g9216 | g9216.t8 | exon | g9216.t8.exon8 | 865488 | 865544 |
| chr_1 | g9216 | g9216.t8 | exon | g9216.t8.exon9 | 867493 | 867626 |
| chr_1 | g9216 | g9216.t8 | TSS | g9216.t8 | NA | NA |
Sequences
>g9216.t8 Gene=g9216 Length=2013
TGACGACCGCTTATCTTTGGCAGAGTTCACGCTCATCTGTCGAGCATTGTTTCGCAATGA
TAAAGGACATATTTATATAGTACCATCGGATCAGTTGGAGCAAATGTTTGCCGTATTTGA
TAAAAATCAGGATGGCTATATAGATCGTGATGAATTTACATTCTGTTGGAATTCATGGAT
CAAAACAGTAAATTGTGAGACCAATAAATGCTTATCTCGTTGTCGATGTTCAAAATGACT
TCATAAGTGGTTCTTTAAACATCAGCAATTGCTCTGCACAACAGAATGGCATCGAGGTAA
TTGATCCAATCAACAAGCTAATAGACACGGTTGAATTTGATGCGGTCTTTTATTCACTCG
ATTGGCATCCGGCTGATCACGTATCATTCATTGACAACATTAAGCAGCGTCCAATTCATC
CAACGAGTCCTTTAAATGCTGACAATGCAGCAGTTTATGATACTGTAATTTTTGCTGGAC
CTCCTCCTATGAGGAATCGATTATGGCCGAGACATTGTGTCCAAGATACATGGGGAAGTG
AATTGCATAAAGACCTTAAGATAGTAGAAAATTCTATTAAAGTATATAAGGGCACTAATC
CAGAAGTTGATTCTTATTCTGTCTTTTGGGACAATAAGAAAATGTCAGATACTTCTCTAT
GTGGACAATTGAAGCAAAAAGGCATTACTGATGTATATGTTTGTGGTCTTGCATATGATG
TTTGTGTTGGAGCTACAGCAACAGATGCCCTTTCAGCTGGATATCGTACAATTCTTATTG
ATGATTGTTGCCGTGGTGTAGATCTACAGGACATTGAAACCACAAAAGAGACTGTCCTCA
ATAATCATGGCGTCATTGTTCATTCAAAAGAGGTGAAAGCAATGGTTGAAGGACGTGATC
GCAGACCCGAACTCGGCTTCAAACTCGCAATGGAGTTGAAAAATGCGGAAAATGAAAACA
AACGTGGTCGAAGGCAGATTTAAGCAACAGCAGTAGCAGCCAAAAGTAGAAAATTTCCTC
GCGCTACTTCTCCCTTCATAATGACACTTTTTTTCTCTTCTTCCGCTCTATATGTTAAGC
ATTCATGTTATTTTGTAGCAATACTTGTATACCCTAGAGTAGTCGCCGCCACTTTCTCTT
GCTCTCACAATTTATGTGCATTTTTGATTCTTTTTTTATTTCCTTCTTTTTCTCTTGCCT
CTGCAACTTATGTAGATTTTTAAGTGCTCAAGGATTTTATGCGGAAGAACAAAAAATACT
TAAATATTATATGCATAATGAGAGTAAGTCGAAGTGAATGTAGATCTTGAAAAAAATGCA
GAATTTTTTATGTAAATTTAATTTTCACAACTGAAATTAACAAAAGTTTACTTACTGACA
TTTCCATAAAATGAATTAATACCAATTATTAGTTTTATGCTCTAAAATTTACTATACATT
CCAAATTTTAATTCCTTTAGTTGCATAAAAAGTGTTTTCATTATTAAAATTAAAGAGAAT
GCAATGAACAAATTTAATATTCGTGTTTACTTGTATAGCAACTAAATTACATAGTTTTCT
GTTTTATTTACTTGATTAAACATAAATTGCAAGAAAATTAACTTTTAAGTGCTTTCAATG
ATGATGAAGAAGAAGATTTAATATTTACTTAATATTACTAACAATAATGATGATGATAGA
ATAATAATGTAATAAAGAGAATGGAGATGCACTTTTGAATGTTGAGAGACAATTTCACTT
GACGTTTATCACTTTAATTATATCTTATTCTCTCAGTGTTTGTACTTACACTCTCCTATC
ATCATCATCTTTTTTTCTTTCTTCATCATATTTTAAACATTCTTATTATTTTTATTAAAA
GCTAAAAAATATTAAAAGTTGATATCTCGATGTAAAAATAATAAAAAAATGTACTTAGAA
TGATTAAAAAAGGGTTAAATGACATCATTGTATAAAATTAAAGCTTTAAATTCAAAATAA
AAAAAAATATTGAGGAAAACACAAGAAATGCAG
>g9216.t8 Gene=g9216 Length=164
MRNRLWPRHCVQDTWGSELHKDLKIVENSIKVYKGTNPEVDSYSVFWDNKKMSDTSLCGQ
LKQKGITDVYVCGLAYDVCVGATATDALSAGYRTILIDDCCRGVDLQDIETTKETVLNNH
GVIVHSKEVKAMVEGRDRRPELGFKLAMELKNAENENKRGRRQI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g9216.t8 | Gene3D | G3DSA:3.40.50.850 | - | 1 | 132 | 0 |
| 2 | g9216.t8 | PANTHER | PTHR11080 | PYRAZINAMIDASE/NICOTINAMIDASE | 2 | 152 | 0 |
| 1 | g9216.t8 | Pfam | PF00857 | Isochorismatase family | 4 | 110 | 0 |
| 3 | g9216.t8 | SUPERFAMILY | SSF52499 | Isochorismatase-like hydrolases | 3 | 150 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
