General information for g9224.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Autophagy protein 12-like.
Parent gene
- The parent gene g9224 is located on chr_1: 905594..906005 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9224 | g9224.t1 | TTS | g9224.t1 | 905501 | 905501 |
| chr_1 | g9224 | g9224.t1 | isoform | g9224.t1 | 905594 | 906005 |
| chr_1 | g9224 | g9224.t1 | exon | g9224.t1.exon1 | 905594 | 905853 |
| chr_1 | g9224 | g9224.t1 | cds | g9224.t1.CDS1 | 905594 | 905853 |
| chr_1 | g9224 | g9224.t1 | exon | g9224.t1.exon2 | 905921 | 906005 |
| chr_1 | g9224 | g9224.t1 | cds | g9224.t1.CDS2 | 905921 | 906005 |
| chr_1 | g9224 | g9224.t1 | TSS | g9224.t1 | 906067 | 906067 |
Sequences
>g9224.t1 Gene=g9224 Length=345
ATGACCGATGAAAATCAAGAAAACTCATCGTTAGGTGTAGAACGATTATCAATTCAACCA
GAGAAACCTGCAGAAATTGTGAAAATTGATATTCTATTAAATGCTGTTGGAAATTCACCA
ATAATGAAACAAAGAAAGTGGACAGTTGATTGGATGAAGGATATCTCATGGGTTAGCAAA
TTTATTCACAAATATTTAAAACTTGACTCTGAAGATAAATTATTTCTATACATCAATCAA
ACTTTTGCACCCTCACCCGACCAAATCCTAAAAAATCTTTACGAGTGTTATGGTAGTCAA
AATAAACTGTCTCTTCATTATTCTATTTCTCCTGCATGGGGTTAA
>g9224.t1 Gene=g9224 Length=114
MTDENQENSSLGVERLSIQPEKPAEIVKIDILLNAVGNSPIMKQRKWTVDWMKDISWVSK
FIHKYLKLDSEDKLFLYINQTFAPSPDQILKNLYECYGSQNKLSLHYSISPAWG
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g9224.t1 | CDD | cd01612 | Ubl_ATG12 | 28 | 113 | 0 |
| 5 | g9224.t1 | Gene3D | G3DSA:3.10.20.90 | - | 26 | 114 | 0 |
| 2 | g9224.t1 | PANTHER | PTHR13385 | AUTOPHAGY PROTEIN 12 | 27 | 114 | 0 |
| 3 | g9224.t1 | PANTHER | PTHR13385:SF5 | UBIQUITIN-LIKE PROTEIN ATG12 | 27 | 114 | 0 |
| 1 | g9224.t1 | Pfam | PF04110 | Ubiquitin-like autophagy protein Apg12 | 28 | 114 | 0 |
| 4 | g9224.t1 | SUPERFAMILY | SSF54236 | Ubiquitin-like | 18 | 114 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005737 | cytoplasm | CC |
| GO:0000045 | autophagosome assembly | BP |
KEGG
Orthology
- This transcript has been annotated with K08336 (ubiquitin-like protein ATG12)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
