Gene loci information

Transcript annotation

  • This transcript has been annotated as Myosin-IIIa.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g9227 g9227.t1 isoform g9227.t1 934603 942581
chr_1 g9227 g9227.t1 exon g9227.t1.exon1 934603 934723
chr_1 g9227 g9227.t1 cds g9227.t1.CDS1 934603 934723
chr_1 g9227 g9227.t1 exon g9227.t1.exon2 934802 934833
chr_1 g9227 g9227.t1 cds g9227.t1.CDS2 934802 934833
chr_1 g9227 g9227.t1 exon g9227.t1.exon3 935638 935809
chr_1 g9227 g9227.t1 cds g9227.t1.CDS3 935638 935809
chr_1 g9227 g9227.t1 exon g9227.t1.exon4 935941 936184
chr_1 g9227 g9227.t1 cds g9227.t1.CDS4 935941 936184
chr_1 g9227 g9227.t1 exon g9227.t1.exon5 936577 936609
chr_1 g9227 g9227.t1 cds g9227.t1.CDS5 936577 936609
chr_1 g9227 g9227.t1 exon g9227.t1.exon6 936907 938397
chr_1 g9227 g9227.t1 cds g9227.t1.CDS6 936907 938397
chr_1 g9227 g9227.t1 exon g9227.t1.exon7 938470 938623
chr_1 g9227 g9227.t1 cds g9227.t1.CDS7 938470 938623
chr_1 g9227 g9227.t1 exon g9227.t1.exon8 939045 939186
chr_1 g9227 g9227.t1 cds g9227.t1.CDS8 939045 939186
chr_1 g9227 g9227.t1 exon g9227.t1.exon9 939331 939438
chr_1 g9227 g9227.t1 cds g9227.t1.CDS9 939331 939438
chr_1 g9227 g9227.t1 exon g9227.t1.exon10 939683 939755
chr_1 g9227 g9227.t1 cds g9227.t1.CDS10 939683 939755
chr_1 g9227 g9227.t1 exon g9227.t1.exon11 939819 939927
chr_1 g9227 g9227.t1 cds g9227.t1.CDS11 939819 939927
chr_1 g9227 g9227.t1 exon g9227.t1.exon12 940287 940556
chr_1 g9227 g9227.t1 cds g9227.t1.CDS12 940287 940556
chr_1 g9227 g9227.t1 exon g9227.t1.exon13 940627 941132
chr_1 g9227 g9227.t1 cds g9227.t1.CDS13 940627 941132
chr_1 g9227 g9227.t1 exon g9227.t1.exon14 941198 941286
chr_1 g9227 g9227.t1 cds g9227.t1.CDS14 941198 941286
chr_1 g9227 g9227.t1 exon g9227.t1.exon15 941707 941947
chr_1 g9227 g9227.t1 cds g9227.t1.CDS15 941707 941947
chr_1 g9227 g9227.t1 exon g9227.t1.exon16 942203 942581
chr_1 g9227 g9227.t1 cds g9227.t1.CDS16 942203 942581
chr_1 g9227 g9227.t1 TSS g9227.t1 NA NA
chr_1 g9227 g9227.t1 TTS g9227.t1 NA NA

Sequences

>g9227.t1 Gene=g9227 Length=4164
ATGAATTATAAGGGACTCTCACAACACATTGATTTCAACAGTTTACCGAATCCGGAAGAA
AGATTTGAATTGCAACATGTTATTGGCGAAGGCACTTATGGGAAATGTTATTATGCAAAA
GATAAAGTTACCGGCATTAATGTGGCAGTGAAGATTTTGGAAACAATAGCAGAAAATCTT
GAGGAAATTGAAGAGGAATTTTTAGTATTGCGAGATCTAAGTTGTAGACATCCAAATTTG
CCAAAGTTTTATGGAATTTTTCTTAAAAAAACAAAAAACAAAGATGAAGATCAATTGTGG
TTTGTGATGGAGTTGTGTTTAGGAGGCTCAGTAACAGATTTGGTTCATGATTTACGTGCA
AAAAATTTGAGTCTCAATGACAACACAATTGCTTATATCTTATGTGAAACACTCAGTGCA
TTGGCCTTTCTTCATGAAAATCATATAATGCACAGAGATGTTAAAGGCCACAATATTTTA
TTAACAGAAGATGGAGACATTAAATTAGTGGACTTTGGTGTCAGTTCTCATTTGGCATTG
ACCTTGGCAAGACGAAATACATCTGTTGGAACTCCTTATTGGATGCCTCCAGAAATAATT
GCATGTGAGCAACAATTAGATCAAAATTATGACTCTCGTTGTGATGTTTGGAGTCTTGGC
ATAACGGCAATTGAGCTTGCTGAAGGTGAACCACCGCTGTCAAATGTTCATCCGATGAAA
GCACTTTTTGAAATTCCACGCAATAAACCGCCTGAATTGAGGGAAAAAAACAAATTTTCA
CAATTGCTTTCTGATTTCATAGCCACGTGTCTCATCAAAGACTTTGAGCAGCGACCCTTT
GCACGTCAAATATTAAGACATCCCTACATGACAGCAATAGATAAGAAGAAAGCCAAGCAC
GAGCTTTCTGAATATCTCATGTACAGAGTAAAAAATAAGAAAAATGTGAAACGCAAGGTA
AATGTTGTTACAAAGCAACGAAACCTCAATTTAGATATCAAGAGTAAAGAAATCATCGAT
GACCTGGCTCAACTAGAAGAACTAAATGAAGGCATGATTGTTGATCAACTGAAACTTCGT
TATGAGCAAAATCAAATTTATACATACATTGGGGACATTTTGATTGCATGCAATCCATTC
GAGCAGCTACCAATATACACACAATATCATCAAGAGAAATACAGTGGCAAAACACGAGCT
GAAAATCCACCTCATATCTTTGCTGTTGCTGATTTCGTACAGAAAAATTTACTGCATGAA
AAGCAAAACCAAACTGTTGTGATTTGCGGTGACTCAGGTAGCGGCAAAACTGAAACTGCT
AATTTACTGCTCAAGCATTTTGTTTTCTTGGGAAAAGAGTCAAACCGCGACTTGGAAGAG
AAAATTCTCAAGATTAATCCAATCATGGAAGCTTTTGGGAATGCTCGAACGGGCATCAAC
TCAAATAGCAGTCGTTTTGGAAAATATCTAGAATTATTTATTGGCAATTGTGGAAAGGTC
AATGGTGCCCGCATTTCAGTTTATCTTCTTGAACAAAGTCGAGTTGTGAAGCAGGGCATG
AACGAGGGAAATTTTCATATTTTTTATTATCTTTATGATGGTTTTCAGAAGGAAAATCGT
TTGCAAGATTATTATCTTAGCGAGCGGACAAAGAATCAACATAATTATCTCAAGCAAGGA
CTAAATTCTCAGAAGAGCAATTATGAAAAATGGAAACAATTAAAAGAAAGCTTTAAAATT
GTTGGATTTAAAGAGAAAGATATTGATGCAATTTATCGAATTCTTGCGGCAATTATCAAT
TTAGGCGATATCGATTTTGGTGAAGTGATTACTGGTGATAATACTGACAATGCTGCTTGT
GTTTTAGACACATCACCGTTATTGAAAGTTGCACACCTTCTGGGAATTGAGAAGAACGAA
TTGCATGATTGCTTGATTTCAAATTCTGTCGTTATGCGCGGCGAGACAATTATCAAGAAC
AATACCATTCAGGAAGCTGTCTCTTGTCGAGATGCCATGGCAAAAGCTCTCTATGGTCGG
TTATTTGATTGGATTGTGAATCACATTAATAGTATGCTGATTTCAAATAATCAACTACAG
CAATTAGCAATTGGTTTATTAGACATTTTTGGATTTGAAAATCAACCAAGTAATGGATTT
GAACAGTTGATGATTAACATTGCAAATGAACAAATGCAATATTATTTCAATCAGAAAATA
TTTTCATGGGAACAGCAAGAGTATATGGCTGAAGGCATTCCAGTGGATCTCGTTGAATTT
TCTGATAACAGACCAGTGCTTGATTTACTTTTGACTCGACCACTTGGTATTTTGGCATTA
ATAGACGAGGAATCAAGATTTCCAAGATCATCAGATAGAACATTGATAGACAAACTCCAT
GGCATCATAAAGTCCAAGTTTTATCAGCGTCCCAAATCAAATGCAATCAGCTTTGCAATT
CATCATTTTGCTGGTCGAGTGGTATATGATGCAGAAGGTTTTATTGAGAAAAATAAAAAT
TTCTTACCATTGGAAGTAATTCAATTAATAAGAGGGAGTCAATATGATATCATTCGTTTC
TTATTTCAATGTCCAATAAGTAAAACTGGAAATTTATTCTCACCATTGACAGAAAATAAT
CAGACAGTCGAAGGATCAGTGATGCAAAATGCAGCCAAGGAACTCTTCTTAAGTCGTAAT
AGAAACGACCTCAATCCACAATCACAATCTCGAGTTCAACAAACAATGGCGATATACTTC
AGATATTCGCTTATGGACTTATTACAAAAGATGATTGCGGGACAGCCAACATTCATTCGA
TGCATTAAACCAAATAATTTAAAACTTGCAAAGAAATTTTGTTCTCTTGAAGTGACGAAA
CAATTGCGTTATGCTGGTGTACTTGAAACTGTTCGTATAAGACAGAATGGTTTTAGTCAT
CGCTTGAAGTTCAGTGACTTCCTTAAAAAATATTATTCTCTCGCTTTTAAATTCAATGAA
CGGATCATCGTCAACAGGGATACGTGCAAACAACTTCTCATGCGGTTAAAGATTGATAAT
TATGCGCTAGGAAAATCAAAAGTTTTCCTCAAATATTATCACGTAGAGTATTTATCAAAA
CTTTATGAGGATCAGAATAGGAAGATTGTAATCATGCAGTCGTTAGTTCGTCGTTGGCTT
GCAATGAGAAAGTTTAAATTGATGAAGCACGATAAGAATCTGAAGATGATGAACATTAAG
AAGATTTCGCAAGCATTATTGAAGAAAGAGAGTAAAATTCCTTTGCTGTATGAGAACATG
AAGGTCCATGAAGAGAAAGTGAAAAATGTTGAAGTGTCGAGTAAAATAGAGGAAAAGTTA
AGGATGAAAATGAAGGCGTCAAAATCACAAGTGGAGCTTAAAAAGTTTCATCAGAAAGAG
AATATGAGTGATGATGATATATTGAAGATTATAAAGAGTGAACAAGGTGTTACAAAAGAA
TTATTGAAAGAAAGACAAATGCAATTTGCAGAATTTGCTGAAAAAATTCATCTTGCTAAT
CAAGTTATTCACGAGAACTTGCGTCGAAATAAAGCTGGAATATCATTGATGAAGATAGAG
AAAATGGAGCAGTCATATAAAAGACCTCCAGGCTTTTCACTTATACCAGGATTGCTGAGT
AAAGCAAGTTCTATTGGTCCCAAATCAGCAGACGTTATAATGAATTCTGACATTTATCAA
ATAAATAAACATTTAGACACAAATTTATTAAATTTCTATAAGGAGGATGCACTACAATGC
CTAAGACCATTCAACTATCTCAAACCAAACACAAAGTTTATTAAAGTTCATGAAAGTTTA
AGCAGCAACAATATAATGAAGGAACTCGAGCGACAAACGAGAAATAGCAAAAAGGATGAG
ATTAAATGTGACTTGCAGAATGGTGTATTTTTGAGAACAGAGACACTCGATTATAAAACA
AACAAAAAGAAAGATAAATCAATAGAGGAATCAATTATAAATGATGGCTTAAAGCGATAT
GAGGATAGTCAAAATAATTCTCATTTGGGACCATTCAACTTTCGAATGCTTCTTCGTTCA
ACTGAATTTGCACCAACTGAAAGCTTGAGAAAGCGCAAAATTGTTTTTACATCAATGTGT
CCTGATAAAAATTTGAAATTTTAA

>g9227.t1 Gene=g9227 Length=1387
MNYKGLSQHIDFNSLPNPEERFELQHVIGEGTYGKCYYAKDKVTGINVAVKILETIAENL
EEIEEEFLVLRDLSCRHPNLPKFYGIFLKKTKNKDEDQLWFVMELCLGGSVTDLVHDLRA
KNLSLNDNTIAYILCETLSALAFLHENHIMHRDVKGHNILLTEDGDIKLVDFGVSSHLAL
TLARRNTSVGTPYWMPPEIIACEQQLDQNYDSRCDVWSLGITAIELAEGEPPLSNVHPMK
ALFEIPRNKPPELREKNKFSQLLSDFIATCLIKDFEQRPFARQILRHPYMTAIDKKKAKH
ELSEYLMYRVKNKKNVKRKVNVVTKQRNLNLDIKSKEIIDDLAQLEELNEGMIVDQLKLR
YEQNQIYTYIGDILIACNPFEQLPIYTQYHQEKYSGKTRAENPPHIFAVADFVQKNLLHE
KQNQTVVICGDSGSGKTETANLLLKHFVFLGKESNRDLEEKILKINPIMEAFGNARTGIN
SNSSRFGKYLELFIGNCGKVNGARISVYLLEQSRVVKQGMNEGNFHIFYYLYDGFQKENR
LQDYYLSERTKNQHNYLKQGLNSQKSNYEKWKQLKESFKIVGFKEKDIDAIYRILAAIIN
LGDIDFGEVITGDNTDNAACVLDTSPLLKVAHLLGIEKNELHDCLISNSVVMRGETIIKN
NTIQEAVSCRDAMAKALYGRLFDWIVNHINSMLISNNQLQQLAIGLLDIFGFENQPSNGF
EQLMINIANEQMQYYFNQKIFSWEQQEYMAEGIPVDLVEFSDNRPVLDLLLTRPLGILAL
IDEESRFPRSSDRTLIDKLHGIIKSKFYQRPKSNAISFAIHHFAGRVVYDAEGFIEKNKN
FLPLEVIQLIRGSQYDIIRFLFQCPISKTGNLFSPLTENNQTVEGSVMQNAAKELFLSRN
RNDLNPQSQSRVQQTMAIYFRYSLMDLLQKMIAGQPTFIRCIKPNNLKLAKKFCSLEVTK
QLRYAGVLETVRIRQNGFSHRLKFSDFLKKYYSLAFKFNERIIVNRDTCKQLLMRLKIDN
YALGKSKVFLKYYHVEYLSKLYEDQNRKIVIMQSLVRRWLAMRKFKLMKHDKNLKMMNIK
KISQALLKKESKIPLLYENMKVHEEKVKNVEVSSKIEEKLRMKMKASKSQVELKKFHQKE
NMSDDDILKIIKSEQGVTKELLKERQMQFAEFAEKIHLANQVIHENLRRNKAGISLMKIE
KMEQSYKRPPGFSLIPGLLSKASSIGPKSADVIMNSDIYQINKHLDTNLLNFYKEDALQC
LRPFNYLKPNTKFIKVHESLSSNNIMKELERQTRNSKKDEIKCDLQNGVFLRTETLDYKT
NKKKDKSIEESIINDGLKRYEDSQNNSHLGPFNFRMLLRSTEFAPTESLRKRKIVFTSMC
PDKNLKF

Protein features from InterProScan

Transcript Database ID Name Start End E.value
18 g9227.t1 Coils Coil Coil 46 73 -
13 g9227.t1 Gene3D G3DSA:3.30.200.20 Phosphorylase Kinase; domain 1 5 105 9.2E-25
14 g9227.t1 Gene3D G3DSA:1.10.510.10 Transferase(Phosphotransferase) domain 1 106 319 6.3E-63
16 g9227.t1 Gene3D G3DSA:3.40.850.10 Kinesin 340 973 2.7E-194
15 g9227.t1 Gene3D G3DSA:1.10.10.820 - 523 582 2.7E-194
12 g9227.t1 Gene3D G3DSA:1.20.120.720 - 583 901 2.7E-194
17 g9227.t1 Gene3D G3DSA:1.20.58.530 - 713 934 2.7E-194
11 g9227.t1 Gene3D G3DSA:3.30.70.3240 - 977 1044 1.2E-7
3 g9227.t1 PANTHER PTHR46256 AGAP011099-PA 3 1305 0.0
7 g9227.t1 PRINTS PR00193 Myosin heavy chain signature 367 386 1.8E-42
8 g9227.t1 PRINTS PR00193 Myosin heavy chain signature 423 448 1.8E-42
5 g9227.t1 PRINTS PR00193 Myosin heavy chain signature 467 494 1.8E-42
4 g9227.t1 PRINTS PR00193 Myosin heavy chain signature 703 731 1.8E-42
6 g9227.t1 PRINTS PR00193 Myosin heavy chain signature 756 784 1.8E-42
2 g9227.t1 Pfam PF00069 Protein kinase domain 23 290 8.7E-57
1 g9227.t1 Pfam PF00063 Myosin head (motor domain) 340 1031 5.0E-192
20 g9227.t1 ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 28 51 -
19 g9227.t1 ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 149 161 -
25 g9227.t1 ProSiteProfiles PS50011 Protein kinase domain profile. 22 290 48.23
23 g9227.t1 ProSiteProfiles PS51456 Myosin motor domain profile. 337 1043 213.964
24 g9227.t1 ProSiteProfiles PS50096 IQ motif profile. 1045 1073 6.559
21 g9227.t1 SMART SM00220 serkin_6 22 290 1.6E-82
22 g9227.t1 SMART SM00242 MYSc_2a 331 1044 2.8E-228
10 g9227.t1 SUPERFAMILY SSF56112 Protein kinase-like (PK-like) 14 296 4.32E-75
9 g9227.t1 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 309 1069 9.74E-220

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005524 ATP binding MF
GO:0005515 protein binding MF
GO:0016459 myosin complex CC
GO:0004672 protein kinase activity MF
GO:0003774 cytoskeletal motor activity MF
GO:0006468 protein phosphorylation BP

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values