Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g924 g924.t1 TTS g924.t1 6875846 6875846
chr_3 g924 g924.t1 isoform g924.t1 6876003 6877202
chr_3 g924 g924.t1 exon g924.t1.exon1 6876003 6877202
chr_3 g924 g924.t1 cds g924.t1.CDS1 6876003 6877202
chr_3 g924 g924.t1 TSS g924.t1 6877369 6877369

Sequences

>g924.t1 Gene=g924 Length=1200
ATGCAGCAGGTAATTGATTGTGAATATTATTATGGAAACTGGACTCTATCGCAAGGTGCA
TACAGTGTTCACATAGATGATCAAATCATTTCTGATGACAAAATTCATGAATATCGTGTT
ATTCATGACGATGGAATGATTAACAAAAATGTCAGAGGAATAAATTTTCGTAACTGTACG
ATTTCTAGAGTTCCACAAGGTTTGACAAAAATCTTTCCAAATGCAAAATTCCTTCAGTTG
TCATATTGCAAATTAAAATCTCTAAAGAGAGAAGATTTAAAAGAATATTCAAAATTTACT
GATTTAACAATAATATTTAATGAAATTCCTTTTATACCTGGTGATTTATTAGCTGATATG
AAAGATTTAATTGGAGTATGGTTACATGACAACAAAATTCAAATTATCGAGCCAAATTTA
CTTGATGGATTAATAAACTTGAAAGCATGTGATCTTTCAAATAATTTGTGCATTGATATG
AAATATGATGATTTAGAAGAAGATAAAGGAAATTCAACTTTTGGAGAACTAAGAACTGAA
ATTCGAAAAGTTTATGAAAATTCACCATGGAGGAAAATTCACCTTGAAAATAAGACGTTG
AAAGCAGAAAATGAAATATTAAAGCAAAATCTTAAAAGTGAAATTGGAAATGATTTAGAA
GAAATAATTAAAGTCGATGATTTTAAAGATTTTACAATTTTAGTAAAAGGTGAAAAATTT
AAAGCACATAAGTTAGTTTTAGCTGCAAGAAGCCAAACATTTGCTGAAATGCTTAAGAAA
AACCTACAAATTGAATGTTTAAACCTTGTTGATATTTCAAGCAAAATATTTCGCGAAATT
CTTAATTTTATTTATACTAATGAATTTCCAAAGTCTAATGAAATTGATTTTATTCAACTT
TTCATTGCATCAAGAAGATTAAAAATTGAAAAACTCATACATTTTGCTGCTGATAAATTG
ATCGATGAAATTAGTCCAGAAAATGCATTAGAAATCTTGAAAATGAGTAATAAATATGGA
AATGAAAAACTACAAAAAAAGTCATTTGATGAAATCAAAAAAATATTGAACAATATAAAA
ATTAGTGATGACTTAATAAAAGATACAGAAAAATTACAAAAAATGTTGGAAGTTAAAATA
AAACAAAACAAAATAATGGAAGTACTGAATGAAGAAATGTCAAAGTTATTGAAAGAATAA

>g924.t1 Gene=g924 Length=399
MQQVIDCEYYYGNWTLSQGAYSVHIDDQIISDDKIHEYRVIHDDGMINKNVRGINFRNCT
ISRVPQGLTKIFPNAKFLQLSYCKLKSLKREDLKEYSKFTDLTIIFNEIPFIPGDLLADM
KDLIGVWLHDNKIQIIEPNLLDGLINLKACDLSNNLCIDMKYDDLEEDKGNSTFGELRTE
IRKVYENSPWRKIHLENKTLKAENEILKQNLKSEIGNDLEEIIKVDDFKDFTILVKGEKF
KAHKLVLAARSQTFAEMLKKNLQIECLNLVDISSKIFREILNFIYTNEFPKSNEIDFIQL
FIASRRLKIEKLIHFAADKLIDEISPENALEILKMSNKYGNEKLQKKSFDEIKKILNNIK
ISDDLIKDTEKLQKMLEVKIKQNKIMEVLNEEMSKLLKE

Protein features from InterProScan

Transcript Database ID Name Start End E.value
10 g924.t1 CDD cd18186 BTB_POZ_ZBTB_KLHL-like 230 307 7.74827E-19
9 g924.t1 Coils Coil Coil 197 217 -
8 g924.t1 Coils Coil Coil 386 399 -
6 g924.t1 Gene3D G3DSA:3.80.10.10 Ribonuclease Inhibitor 20 179 6.4E-17
7 g924.t1 Gene3D G3DSA:3.30.710.10 Potassium Channel Kv1.1; Chain A 196 354 2.7E-31
2 g924.t1 PANTHER PTHR24413:SF213 FI01029P-RELATED 202 387 1.2E-22
3 g924.t1 PANTHER PTHR24413 SPECKLE-TYPE POZ PROTEIN 202 387 1.2E-22
1 g924.t1 Pfam PF00651 BTB/POZ domain 226 321 2.3E-18
12 g924.t1 ProSiteProfiles PS50097 BTB domain profile. 229 293 17.335
11 g924.t1 SMART SM00225 BTB_4 229 324 1.9E-19
4 g924.t1 SUPERFAMILY SSF52058 L domain-like 49 159 1.13E-14
5 g924.t1 SUPERFAMILY SSF54695 POZ domain 210 323 5.65E-21

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005515 protein binding MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values