General information for g9248.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as E3 ubiquitin-protein ligase lubel.
Parent gene
- The parent gene g9248 is located on chr_1: 1265143..1268324 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9248 | g9248.t1 | TTS | g9248.t1 | 1248148 | 1248148 |
| chr_1 | g9248 | g9248.t1 | isoform | g9248.t1 | 1248343 | 1266159 |
| chr_1 | g9248 | g9248.t1 | exon | g9248.t1.exon1 | 1248343 | 1248378 |
| chr_1 | g9248 | g9248.t1 | cds | g9248.t1.CDS1 | 1248343 | 1248378 |
| chr_1 | g9248 | g9248.t1 | exon | g9248.t1.exon2 | 1249153 | 1249321 |
| chr_1 | g9248 | g9248.t1 | cds | g9248.t1.CDS2 | 1249153 | 1249321 |
| chr_1 | g9248 | g9248.t1 | exon | g9248.t1.exon3 | 1249766 | 1249923 |
| chr_1 | g9248 | g9248.t1 | cds | g9248.t1.CDS3 | 1249766 | 1249923 |
| chr_1 | g9248 | g9248.t1 | exon | g9248.t1.exon4 | 1249987 | 1250334 |
| chr_1 | g9248 | g9248.t1 | cds | g9248.t1.CDS4 | 1249987 | 1250334 |
| chr_1 | g9248 | g9248.t1 | exon | g9248.t1.exon5 | 1252916 | 1253005 |
| chr_1 | g9248 | g9248.t1 | cds | g9248.t1.CDS5 | 1252916 | 1253005 |
| chr_1 | g9248 | g9248.t1 | exon | g9248.t1.exon6 | 1253165 | 1253374 |
| chr_1 | g9248 | g9248.t1 | cds | g9248.t1.CDS6 | 1253165 | 1253374 |
| chr_1 | g9248 | g9248.t1 | exon | g9248.t1.exon7 | 1253430 | 1253696 |
| chr_1 | g9248 | g9248.t1 | cds | g9248.t1.CDS7 | 1253430 | 1253696 |
| chr_1 | g9248 | g9248.t1 | exon | g9248.t1.exon8 | 1254335 | 1256511 |
| chr_1 | g9248 | g9248.t1 | cds | g9248.t1.CDS8 | 1254335 | 1256511 |
| chr_1 | g9248 | g9248.t1 | exon | g9248.t1.exon9 | 1256617 | 1258107 |
| chr_1 | g9248 | g9248.t1 | cds | g9248.t1.CDS9 | 1256617 | 1258107 |
| chr_1 | g9248 | g9248.t1 | exon | g9248.t1.exon10 | 1259196 | 1259685 |
| chr_1 | g9248 | g9248.t1 | cds | g9248.t1.CDS10 | 1259196 | 1259685 |
| chr_1 | g9248 | g9248.t1 | exon | g9248.t1.exon11 | 1260201 | 1260311 |
| chr_1 | g9248 | g9248.t1 | cds | g9248.t1.CDS11 | 1260201 | 1260311 |
| chr_1 | g9248 | g9248.t1 | exon | g9248.t1.exon12 | 1260471 | 1260644 |
| chr_1 | g9248 | g9248.t1 | cds | g9248.t1.CDS12 | 1260471 | 1260644 |
| chr_1 | g9248 | g9248.t1 | exon | g9248.t1.exon13 | 1260792 | 1260977 |
| chr_1 | g9248 | g9248.t1 | cds | g9248.t1.CDS13 | 1260792 | 1260977 |
| chr_1 | g9248 | g9248.t1 | exon | g9248.t1.exon14 | 1261038 | 1261342 |
| chr_1 | g9248 | g9248.t1 | cds | g9248.t1.CDS14 | 1261038 | 1261342 |
| chr_1 | g9248 | g9248.t1 | exon | g9248.t1.exon15 | 1261678 | 1262064 |
| chr_1 | g9248 | g9248.t1 | cds | g9248.t1.CDS15 | 1261678 | 1262064 |
| chr_1 | g9248 | g9248.t1 | exon | g9248.t1.exon16 | 1262408 | 1263121 |
| chr_1 | g9248 | g9248.t1 | cds | g9248.t1.CDS16 | 1262408 | 1263121 |
| chr_1 | g9248 | g9248.t1 | exon | g9248.t1.exon17 | 1263185 | 1263380 |
| chr_1 | g9248 | g9248.t1 | cds | g9248.t1.CDS17 | 1263185 | 1263380 |
| chr_1 | g9248 | g9248.t1 | exon | g9248.t1.exon18 | 1263726 | 1264103 |
| chr_1 | g9248 | g9248.t1 | cds | g9248.t1.CDS18 | 1263726 | 1264103 |
| chr_1 | g9248 | g9248.t1 | exon | g9248.t1.exon19 | 1264194 | 1264450 |
| chr_1 | g9248 | g9248.t1 | cds | g9248.t1.CDS19 | 1264194 | 1264450 |
| chr_1 | g9248 | g9248.t1 | exon | g9248.t1.exon20 | 1264519 | 1264639 |
| chr_1 | g9248 | g9248.t1 | cds | g9248.t1.CDS20 | 1264519 | 1264639 |
| chr_1 | g9248 | g9248.t1 | exon | g9248.t1.exon21 | 1265143 | 1265274 |
| chr_1 | g9248 | g9248.t1 | cds | g9248.t1.CDS21 | 1265143 | 1265274 |
| chr_1 | g9248 | g9248.t1 | exon | g9248.t1.exon22 | 1265338 | 1265631 |
| chr_1 | g9248 | g9248.t1 | cds | g9248.t1.CDS22 | 1265338 | 1265631 |
| chr_1 | g9248 | g9248.t1 | exon | g9248.t1.exon23 | 1266124 | 1266159 |
| chr_1 | g9248 | g9248.t1 | cds | g9248.t1.CDS23 | 1266124 | 1266159 |
| chr_1 | g9248 | g9248.t1 | TSS | g9248.t1 | NA | NA |
Sequences
>g9248.t1 Gene=g9248 Length=8727
ATGTGGAATCAAGGCCGTCCGATGCCAGATTGGGTGTCGAAGCAAAGTGGAAGAATTGGT
CCACCGCCTCCATCATTGCCAACGAAAAAAATCAATAATGAGCCTGATTATGAAGTCATT
GATTTTTGCAATAATAATTCAACACCAACAAAAAATGGAAATTTAAGAGACATTATGCAA
GCAAATCCAGCTGAAGTTGGTTTAAAATGTGAACTTTGTGGCTCAATTGGGCAAGTTGTA
AAATGTGAACAATGCGTTAAAAATCTATTTTGTCTTACATGTGATGACATGTTTCATCGT
CATCCTAAGAGGCAGAATCATCAAAGAAAGCGTGTTGATTTAGGAAATTTACGTCCACCA
TTACCACCAAAAATGACAACCCAACCAGCAGCTCCAATTCCACCACCACGGAAAAATCGC
AAAAGTTGTCTCTCAAGTCCAATGCCAGAACGTCGTGATCAGGCCATAAGGCAACAACAG
GAGCAAGTGACTGCAACATTTAATGCAACATTGAAAGAAAAACTTGACAAACTAAAAACG
GGCACAATTGATCCACGAACGCGTCCATTGCCCGACATTCCATTACCCGGATCACAAAAG
CATCAAACCGCGACAATGAGAAGTGCAAGCAGTAGCGATGAGTCAAAAAGAAACGTTTTC
GATTCCATCAAAAAACCACCATCTGTTGCGATGGAAAAAATTAAAAATTCCACGGCTGCA
ACACTTGATCGTATGGCAATATTGCAAGCACGCTATCGACAACATAAAGAGGCAATGACA
TCTGAAAATTCAAGCGATAAAAGTCGTCGAACGAGCACAGCATCGACAGTTGATAGTGTT
TCACTTCCACCACCATCACCTGCCCTTTCTAATCGTCCTCCTTTACCACGAATTCAACAT
CAAAAACCTCCATTATCAAATGTCACTAATATTCAACAACAAAATTGGCAAAATAATCAA
AGAAGATTTGAAAATGTTCCACAACAGCAAAATTTTTATCCGCATGAAATAAATCAACAA
AAATCTCCCGCTTTTATAAATCAGGCAAATGCGACTTCATCAATGGTCCGAAGACCTGTT
CCACTACCGGGAAATTTGCAAAATACACCGATGCGAAATATGAGTGCTTCAGTTTTTGAC
CTTAATCAAAATAATACTGGATATTCGATGAACTATCAACAGCAGCAACAGCAATGGGGA
TTTAATTCTATGAATCAGGCTCAATCAATGGCACATCTTAATATGATGAATCCATGGCAA
CAACAACAGCATGCACAATGGATGGGAAACAATTTTAATGGTTCAAATATGAGTTTGAAT
TTACCACAACAACAGCACTTTATGCACAATGACGGTATGTGGAATCCATGGATGCAACAA
CAACAATATCCATATCCAATGATGCCAAATGGTGGAATGCCACTACAACAACAACCACAG
TCAACCCGTTCGAGGATGCAATCAAGAAATCCTTCACGTGCAGCTTCACCCGCATTAAGT
GTTCGTTCACGTCGTTCAATGATTAGTTCACGACAGCAACGACAAAAATATATGCATGAA
GATCTCACAGATGATGAGGATTCAGATCTTGAAATATTTGTCGACGATTCAAGATCTCGA
ATGAAAAGAAATTCATATGCAGATATCAGAAGTGCTGGTCGACGTGAAAGAAGAAATACA
GAACAATTGGATTTGGATTATCGTGATAATGAAGTAATTAGTCGAATTCAAAGAATGAAA
GAAAAGTCGAAACATATTCGTGAAAGACGTAGTGGTTCATTGACTCACTGGCCAGTCACA
AAAAGTAGAGACAGTGGCAGCTTAACACCATCTGACGATGATGATGAAACGCGAAAGCTT
TCAAGTAAATTCCGTAAATCTTCAGTGACATCACCTGTCGCACTTAACAAGTCTAAAATC
CACTCTGATTCTGCCTCCGAGAGAGAAATGAAAGCAGCATTAAGGATGGAGAATGAAAAA
ACAAAGTTGACACCTTCGAATAATGCGCAGAAGATTGTTAAGCCAGCGGCAAATGACTCT
GATGATGATGAAGAACTTGAGAGTGAAAAAAGACCTCTGACAATAACATCGACAAAAAGT
ATTATTCATGAGCCTATTAAAATGTTAGGTGATGTGAAAATAAATAAACAAAATCATGAT
GTGTCACGATCGACGGCTGAAAGGGAAGAGGATAAAAAGATAAGCCATGAGGAAACAAAT
AATGCTATTGAGGTAGTGAAGAAGAATGAAACTGCCGAAATCTGCACATCAAAAGCATCA
ACATCAGTCGCATTATCAACAAAAACAATAACAACAGCACCAGCAGATTTATCAAATGTA
AGCTGGGAATGCGAGCATTGTACGTTTGTAAACGAGCCTGATACGAAAATCTGCGCAATT
TGCTGTAAGACACGCGTTGAAGTGTTGAAGCAACTACCAAAAGTGGATGATGATATTGAC
ATTAACGAAATTAATGATTCAATCTTGCAGAATGAAAGCGATGCCAAGCAAAAAGTTGAA
GAATCAATTGATGATAATATTGAGTCAAAAATCATTGATGTGTTGGAAAGTCCACAAATT
GAAATATCAAATTCAATGACAGCAGTTGCGATTGAAGTTGAAGAGAAGCTTAAAGTGTCA
ACAGCGTGCGGTACATCACCCGACCGAGAAATTGAGCAAATTTTTGCCAATGAATTGAAT
GAAAAGCCGATTAGAGTACCTTCGCCAATAAGTAAACATCAAGAGACAGCTGCTACGACC
GGACGTTCTTCAAAGGTTTCTATTGGTACTTCACCGCCACCACAAAGTGCCGCAACACAG
ACTTATGATGCATCACCCTTCGAGACTGAGACAGAAATTTTTCAATACCCAACAGAGGGT
CGTTTTGCAAATCGTGGCCTACGACGAAGTCATTCGTTTGCCACAACATCTCGATACAAT
GAACCATCAATTCAATCAACACTTCAACGTTCAATGAGTAGACAGAGTTTCTCGAGTGAA
TTTCAGAGTCCCCCAGCATCTAGAGAACTTAGTCCCAATAATTTAGAGAACTTTTTAATA
CGCGAGAGACGCACTAACATTTTATCGAGGCCTGCAATTAATAAAATTGAACAAGAGCTT
TCTTATAAAGGGCCTCAACGCTCGCAGCGGTCATCACTTTACGATTTACCGATGGTGAAT
GATTTTGAAGCATTACGATTAGAAAATTTTATGAATTCACAGCAGCAACAGCGACGATTG
GATCAAACATCAAATACATCTGCTGGCGTTCAATTAGCAAAATTGTTACGCGAAGCTGAA
CATTATAAATTCAATGCCGAAGAATTACAGGCAGCACTAAATCATTGTGAAGGCTCAAAT
CCCATTCAATGGCTTCGTGAGCATTGGCAGAAACTAATTGAAACTGTTCAGCATTTATCG
ACTAAATATGGACATGAGATGAAAGTGAATACGATTGGAACAATTTCAGCAATTGAGGCT
CGTGAAGCGTTAAGATTACACAAGGGAAACATTTGGCATGCAGTCACACAATGCATTGAG
CAACGGCAGAGAAAGTACAATGAAATTGCATCACGCGGAAATTTTACTCGTGAGGATATT
GTTACCAGTTTGACGGCACATCATGGTAATATGGAGCTTGCCTTAATTGAATTGAATAAA
ACGCAGTTGAAACCATTTCTGATGAAAATCTGGGGACCACCAACCATTGACAATGAAAGT
GGAAATTTTCATTCACTTGATTATGATGCGTATAGGAGTAATAACAGTAATAGTCGAATA
GAACCATATATACAGGATTATTTAAATAATATCATCATGCATGGCAATAACAATGATGAT
TTTTATGCGAAAGATTACTTTAGTCCATCGCCCAAATCGATGAGCTTCAAGTCATCCTCA
TTAGACGATCCAATGTCAGAAGCAGGCAATATTAACGATGAATTGTTTACATCATTTGAT
TACAATACAGTAAATAATGCCAATTTATTGCGGGATATCGAAAATCTTATTCAAAATATG
GAACGGAAGCAGCAGCAACAGCAACAAAAGCAAGAGCATATTGAACAACGGGATAATAAT
GAAAATGATACGACAATGTTAAGAAATATTGATAATATCTTAAGTAATATTAAATTAAAT
GAATCGAGACCTCATTCACCTCAATCAAACATAAGTGCTGAAGCCATAAGAATGAAAAGT
CCTATAATGTTAAGGAGCCGCAATGATGATAAAAATAAAGTGGATAGCATGCAAGTGAAT
ATTATCGATGAAGTTAGAAATTTCGTTTCAAATAATATTCAAGAAATTGTGCCAGATTTG
GTGAGTCAAGTGACAAATGAGCTTTTGACATCAATTGAGAATGCAAATACTAATAATAAT
GAAATTGATGAAGAATTTTATGATGCAACAGAATTGAACATGCAAGAATACTTGAGGGAT
AGAAATAATGAAGAATTTGTGGAGAGAAACACTTCAACGCCATTAATGAGAGTGCTTGAT
GAAATGCTTGAATCACACTTAAATGATTTTCTTCGTACACGTCATGATGAAGAGTTTAAT
GAGCGTAGAAGTTCGCCTAATCCAATTCATAATGAGAATGAAGAATTTTTCCCTGTGACA
GACGATGACATTGAATACAATGACCATAATAATCATATTGATTTTATGCGAGCGCGTTAT
GACGAAGAGTATCATGAGACAAACAATGATTTTGCCATTAATACCGACAGTCACAAGGGA
GACAACAATGACGATAGCTCGAATCACGATAATTTAATTCTGTCTGAATTGCAAAATGTA
AATCAAGCTAATAATATAGCAGAGTCACTAGGCAACGAGACAGAAGAAATAAATGAACAA
CAACATCAGCAGACGTCATTGCGTGCTAGTGGTGAAACTGAAGAGCCCTTAAAGTATAAA
TCGAGCTATAATCTCAAAATATTGAGACGTTCATCAAAAAGAAGCAAGCGTGAGCGTGAC
TTTAAGAAACGCAACAGTCTTATATTAGAAAATGTTCTATTAGGACGAAGTGAAAAGCAG
AAAATAGCAAATAATTCAAGGCCTACATCAACAGCTTTCAACTCGACTGAATTTAACGAT
GTTGAAAGCAGCAGCAACAACAACAACATTAATCATGAAAGTTTAATAACGGAGAATGCC
GATAGCAAATCTGTGCTGAATCAAAATGAAATTAATGCTTCTATTTCTGTTACTAACTCA
AGTGAACAAGAGACGCAACAAAGTCTGACAGAAAGCAATATAAATAATGATGTTCCAGAA
GCACAAAATTCATTACAAACGTTTGAAAATCAAGAAACAATCAATAATGTTATTGAAATA
GAAGAAACGATTGTTGAATTTATAATAAATGATGAAACTCCAATTCAAAATCAACAAACT
AATGATGAAGCTCAAATATTACAAAATGAAAATTTTAATAATGAAATTCAACTGCAAGAA
TCAATTGAAAATCAACAAAATCTTTCAATTCAAAATGACAATTCCAATAATGAAGCACAA
ATTTTACAAAGTGATAATTTTAATGAAGAAACAAGGTCAGAATTTTTAGCACAAAGTAGT
TCAAATATTTCAATAACAACAATCGAATCAGACTCTATTAAAGTTCCACAAAATCTTTCG
GAACTTGTTGAAGATACACAAAGACTGATCAAACAAATGAAGGACGAAATTAATGCGATT
TATGTTTCGGATGAAGACGATTTGACTGCGAGCGGTGAAGACGATTATACGGAAGAGATT
GAAGAAGAAGAAGATGAAAATTGGGTCGATAACTATGGCGATGAAGAAGAAATCGATGAA
GAGGAGGATTATGGATCTGAATATGATGATTGGTCAGGCGATTATAATGAATCGATACCG
ATAGAAAGCACTAATGATGAAGAAACAGTAATTGAAGAATTAGAATTGCCTGCAGTTGTT
GATGAAAAAGTAAGTGACATAAGCATCATTATCACACCCGAAGAGGAACAACAACAGTCA
GAAATAATTATTGGCACAAATCCAAATGTGACTAACGAGCCAGCGGCAAATAATGCAGCA
GAAAGTGAAGAGAATGAAGAAGAAAGTGTTGTACATGGCAAATTAGAATTAACGCCATTA
TCAACAAATCAATTTAAAGTTGATAGCGATAATGGAAACCAAGAGAACATGGTAACTAAT
CAAATAATACCCGCTGTAGCGATAAATGATGAAAATCCTATTAAAACGATAGTAAATGAA
GCTATTAATGATGTTATTAGTGCCATTTCCATTTCCTTTGATGAAAATATTACACCAGAA
GAAAATGATAATCATTTTAAAGAAAATCGTGACAATATTAATGTCGATAGTGCTGTAAAT
AATTCAATAGATGAAACTAATGGCAATCAATTGATATCATCCGGAATAGAATTGAATAAT
CATATAGAGGAAGAAGTAACTGAGCAACCTTCTACTGTCACATTGAATAATGATGAAAAA
TCAGAGTTAGTGAAAAATGATGAGAGCGAGACACATGAGTCTACTGTTATGCAAATGGAG
CAAAATGACGAGTCACAAGAGCCATTAATAACAAGTGTTGATGTAAAGCGAGAACAAGTA
AATGAGGAGGTAATTGCCACCTCGCCGAGTGACTTTGCAAATCAGCAGCAGCAGCAACAG
CAAAATATTAAAAGTCATGCTGAAAGCGAGGTTGAGACAAATTATAATAACGATGATAAT
CCCATTGATAGTAATCAAGCAAGTGCTGTAGCCAGTAGCAGCAATACAGTACCAACGGTT
GGGCAAAAGAAAGGTACAATTCCAAAAAGTAAGATACCAAGTATAAAAACAACAAAAAAG
AATTCTCTAACGAAAGATAAAGTATCAGATGAACAGATCTCAAAAGAGTCCATGAAAACA
AATAATAGAAAGAGCTCAGTTGACAATAGCAAGACTGATAACGTGGCTGTTAGAAAGAAA
TCGGTTGGAAGTCCATTTGGAGGACTTTTAAGTACATCCAACGTTAAAAGTTTGCAAAAA
GAATTTTTAAATAAAGCAACAACAAGTACAAGTGCAACAACTGCAAAATCTCTAGCACCA
AAATCAAAACCATCAAAATTGATTCCACCAAAATCGCTTACAAAAGAAACAATTCCATCG
CAGACATTTGCAAATAAATTAACAAAGCTGATTACGCCGCCTTCTACAACTAACGTCATG
AAGGAATCAAAAGAAAAAGAGGGTGACGAGGCGAAAGAAAATACGAAGAGTAATTCGGAA
GAGTCGCAGAGGGATTACAGCAAGGACATTGTTCCAAAAAAAAAGTATATGGAACATTGT
TTCAGTGATGAATACTCGACAACAACTGATGATGAGGATGACATTAAAATATCACCACAA
CGAGACCTTTTTGCTATAAAGAAGCAACAGCAGCCTCCACGTCACGATTCAGATGATGAA
ACTTCGGATCAAAAAGTTAACAGATACATTATTGAAGGTCTCGTTCCAAATCATTTGGCT
GCTGAGCTTGCTGTTTCACTTATCGAATTGAAATATCCAAAAGAATCGGCATTGTGGGTA
TCGGCACAAGTTACAACAATTGAGCAAGCAATTGAACTTTTACAGCAAGAATGTGAATTG
TGTACTGATAAATATCCACTGAATCAAATGATAACTATGTTGAAATGTGAACATCAATGT
TGCAAAGAATGCGCTTCAAATTATTTCACAATTCAAATAACTGATCGCTCAATCAACGAC
TGTGTATGTCCTTTTTGTAAATTGCCAGAGCTTCATGACTCCGACGAGGATGTTATTCTC
GAGTACTTCTCGAATCTTGATATTCTGCTGAAAACCATTTTACAGTCTGATGTACATGAC
TTGTTTCAACGAAAAATACGTGATAGGGCACTGTTAAGAGATCCACATTTCAAGTGGTGT
GTTCAGTGTTCATCTGGCTTTTTTGCAAGACCTAAGCAACGACGCTTGATTTGTCCAGAT
TGTGGCTCGGTAACGTGTTCAAAGTGTAGAAAACCTTGGGAGAAACAGCACGAGGGATTA
ACGTGTGAGCAATTTATTGCATGGAAAGAGGCAAATGATCCTGATAAAAATGCCGAAGTT
GTTACGATGCACTTGAAATTGAATGGTATTGATTGTCCGAAATGCAAATTTAGATACGAT
TTAGCGAGAGGTGGTTGTATGCACTTTACGTGCACACAATGCAAATATGAATTTTGCTAT
GGCTGCAACAAGGAATTTTTAATGGGCGCAAAGTGCAAAGTGTCGCCATATTGCGCTAAA
CTCGGCCTGCATGCTCACCATCCGAGAAATTGTCTCTTTTATCTACGAGATAAAGAACCA
CATGAGTTGCAAAGTTTATTGACGATAAATAACATACCCTTCGATACAGAGCCGTCTATA
GCAGGTGATGGTGCTAAGGCATACACAAAATGTCCAATGCAACTACAAAAAGAAACACCA
TCGGGACTGGTTGATACAATTTGTAATGGAGACGTCGCCGATGGACATGCAGGACTTTGT
AGATCGCATTATGTTGAGTATTTGGTCTCAGTTATTTACGAATCAAATTTAGATCCTTTG
CCAGTATTGGATCTAACTGATTGTGTACAAGAATTGAGAAGACGTGGCATTCCTTTGCCG
GAACGTGGTCCATGGGATACTGATCCAATCTATCGAGAAATGTGTCAAAAAATTGTCAAA
GAACAAATCCCATTGGACTCTGAATGA
>g9248.t1 Gene=g9248 Length=2908
MWNQGRPMPDWVSKQSGRIGPPPPSLPTKKINNEPDYEVIDFCNNNSTPTKNGNLRDIMQ
ANPAEVGLKCELCGSIGQVVKCEQCVKNLFCLTCDDMFHRHPKRQNHQRKRVDLGNLRPP
LPPKMTTQPAAPIPPPRKNRKSCLSSPMPERRDQAIRQQQEQVTATFNATLKEKLDKLKT
GTIDPRTRPLPDIPLPGSQKHQTATMRSASSSDESKRNVFDSIKKPPSVAMEKIKNSTAA
TLDRMAILQARYRQHKEAMTSENSSDKSRRTSTASTVDSVSLPPPSPALSNRPPLPRIQH
QKPPLSNVTNIQQQNWQNNQRRFENVPQQQNFYPHEINQQKSPAFINQANATSSMVRRPV
PLPGNLQNTPMRNMSASVFDLNQNNTGYSMNYQQQQQQWGFNSMNQAQSMAHLNMMNPWQ
QQQHAQWMGNNFNGSNMSLNLPQQQHFMHNDGMWNPWMQQQQYPYPMMPNGGMPLQQQPQ
STRSRMQSRNPSRAASPALSVRSRRSMISSRQQRQKYMHEDLTDDEDSDLEIFVDDSRSR
MKRNSYADIRSAGRRERRNTEQLDLDYRDNEVISRIQRMKEKSKHIRERRSGSLTHWPVT
KSRDSGSLTPSDDDDETRKLSSKFRKSSVTSPVALNKSKIHSDSASEREMKAALRMENEK
TKLTPSNNAQKIVKPAANDSDDDEELESEKRPLTITSTKSIIHEPIKMLGDVKINKQNHD
VSRSTAEREEDKKISHEETNNAIEVVKKNETAEICTSKASTSVALSTKTITTAPADLSNV
SWECEHCTFVNEPDTKICAICCKTRVEVLKQLPKVDDDIDINEINDSILQNESDAKQKVE
ESIDDNIESKIIDVLESPQIEISNSMTAVAIEVEEKLKVSTACGTSPDREIEQIFANELN
EKPIRVPSPISKHQETAATTGRSSKVSIGTSPPPQSAATQTYDASPFETETEIFQYPTEG
RFANRGLRRSHSFATTSRYNEPSIQSTLQRSMSRQSFSSEFQSPPASRELSPNNLENFLI
RERRTNILSRPAINKIEQELSYKGPQRSQRSSLYDLPMVNDFEALRLENFMNSQQQQRRL
DQTSNTSAGVQLAKLLREAEHYKFNAEELQAALNHCEGSNPIQWLREHWQKLIETVQHLS
TKYGHEMKVNTIGTISAIEAREALRLHKGNIWHAVTQCIEQRQRKYNEIASRGNFTREDI
VTSLTAHHGNMELALIELNKTQLKPFLMKIWGPPTIDNESGNFHSLDYDAYRSNNSNSRI
EPYIQDYLNNIIMHGNNNDDFYAKDYFSPSPKSMSFKSSSLDDPMSEAGNINDELFTSFD
YNTVNNANLLRDIENLIQNMERKQQQQQQKQEHIEQRDNNENDTTMLRNIDNILSNIKLN
ESRPHSPQSNISAEAIRMKSPIMLRSRNDDKNKVDSMQVNIIDEVRNFVSNNIQEIVPDL
VSQVTNELLTSIENANTNNNEIDEEFYDATELNMQEYLRDRNNEEFVERNTSTPLMRVLD
EMLESHLNDFLRTRHDEEFNERRSSPNPIHNENEEFFPVTDDDIEYNDHNNHIDFMRARY
DEEYHETNNDFAINTDSHKGDNNDDSSNHDNLILSELQNVNQANNIAESLGNETEEINEQ
QHQQTSLRASGETEEPLKYKSSYNLKILRRSSKRSKRERDFKKRNSLILENVLLGRSEKQ
KIANNSRPTSTAFNSTEFNDVESSSNNNNINHESLITENADSKSVLNQNEINASISVTNS
SEQETQQSLTESNINNDVPEAQNSLQTFENQETINNVIEIEETIVEFIINDETPIQNQQT
NDEAQILQNENFNNEIQLQESIENQQNLSIQNDNSNNEAQILQSDNFNEETRSEFLAQSS
SNISITTIESDSIKVPQNLSELVEDTQRLIKQMKDEINAIYVSDEDDLTASGEDDYTEEI
EEEEDENWVDNYGDEEEIDEEEDYGSEYDDWSGDYNESIPIESTNDEETVIEELELPAVV
DEKVSDISIIITPEEEQQQSEIIIGTNPNVTNEPAANNAAESEENEEESVVHGKLELTPL
STNQFKVDSDNGNQENMVTNQIIPAVAINDENPIKTIVNEAINDVISAISISFDENITPE
ENDNHFKENRDNINVDSAVNNSIDETNGNQLISSGIELNNHIEEEVTEQPSTVTLNNDEK
SELVKNDESETHESTVMQMEQNDESQEPLITSVDVKREQVNEEVIATSPSDFANQQQQQQ
QNIKSHAESEVETNYNNDDNPIDSNQASAVASSSNTVPTVGQKKGTIPKSKIPSIKTTKK
NSLTKDKVSDEQISKESMKTNNRKSSVDNSKTDNVAVRKKSVGSPFGGLLSTSNVKSLQK
EFLNKATTSTSATTAKSLAPKSKPSKLIPPKSLTKETIPSQTFANKLTKLITPPSTTNVM
KESKEKEGDEAKENTKSNSEESQRDYSKDIVPKKKYMEHCFSDEYSTTTDDEDDIKISPQ
RDLFAIKKQQQPPRHDSDDETSDQKVNRYIIEGLVPNHLAAELAVSLIELKYPKESALWV
SAQVTTIEQAIELLQQECELCTDKYPLNQMITMLKCEHQCCKECASNYFTIQITDRSIND
CVCPFCKLPELHDSDEDVILEYFSNLDILLKTILQSDVHDLFQRKIRDRALLRDPHFKWC
VQCSSGFFARPKQRRLICPDCGSVTCSKCRKPWEKQHEGLTCEQFIAWKEANDPDKNAEV
VTMHLKLNGIDCPKCKFRYDLARGGCMHFTCTQCKYEFCYGCNKEFLMGAKCKVSPYCAK
LGLHAHHPRNCLFYLRDKEPHELQSLLTINNIPFDTEPSIAGDGAKAYTKCPMQLQKETP
SGLVDTICNGDVADGHAGLCRSHYVEYLVSVIYESNLDPLPVLDLTDCVQELRRRGIPLP
ERGPWDTDPIYREMCQKIVKEQIPLDSE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 19 | g9248.t1 | CDD | cd19815 | Bbox1_HOIP | 69 | 112 | 1.03776E-13 |
| 17 | g9248.t1 | Coils | Coil | Coil | 1092 | 1112 | - |
| 18 | g9248.t1 | Coils | Coil | Coil | 1326 | 1363 | - |
| 15 | g9248.t1 | Coils | Coil | Coil | 1600 | 1620 | - |
| 16 | g9248.t1 | Coils | Coil | Coil | 1818 | 1838 | - |
| 14 | g9248.t1 | Gene3D | G3DSA:2.20.28.140 | - | 776 | 841 | 1.7E-8 |
| 12 | g9248.t1 | Gene3D | G3DSA:1.10.8.10 | DNA helicase RuvA subunit | 1131 | 1195 | 7.2E-6 |
| 13 | g9248.t1 | Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain | 2534 | 2630 | 4.5E-12 |
| 33 | g9248.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 27 | - |
| 58 | g9248.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 102 | 159 | - |
| 39 | g9248.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 122 | 136 | - |
| 36 | g9248.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 177 | 224 | - |
| 50 | g9248.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 198 | 216 | - |
| 27 | g9248.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 255 | 293 | - |
| 48 | g9248.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 265 | 285 | - |
| 26 | g9248.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 475 | 523 | - |
| 42 | g9248.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 475 | 513 | - |
| 30 | g9248.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 578 | 594 | - |
| 53 | g9248.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 578 | 692 | - |
| 45 | g9248.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 607 | 623 | - |
| 37 | g9248.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 624 | 640 | - |
| 29 | g9248.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 641 | 658 | - |
| 31 | g9248.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 660 | 674 | - |
| 44 | g9248.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 904 | 943 | - |
| 34 | g9248.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 912 | 943 | - |
| 51 | g9248.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 973 | 1014 | - |
| 46 | g9248.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1341 | 1364 | - |
| 49 | g9248.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1346 | 1364 | - |
| 55 | g9248.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1614 | 1631 | - |
| 56 | g9248.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1614 | 1636 | - |
| 32 | g9248.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1680 | 1706 | - |
| 25 | g9248.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1736 | 1755 | - |
| 59 | g9248.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 2147 | 2189 | - |
| 41 | g9248.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 2160 | 2174 | - |
| 47 | g9248.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 2175 | 2189 | - |
| 57 | g9248.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 2207 | 2233 | - |
| 35 | g9248.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 2247 | 2263 | - |
| 38 | g9248.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 2247 | 2318 | - |
| 52 | g9248.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 2280 | 2302 | - |
| 28 | g9248.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 2345 | 2360 | - |
| 43 | g9248.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 2345 | 2429 | - |
| 40 | g9248.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 2374 | 2399 | - |
| 54 | g9248.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 2400 | 2429 | - |
| 4 | g9248.t1 | PANTHER | PTHR16004 | RING FINGER PROTEIN 31-RELATED | 97 | 1242 | 0.0 |
| 6 | g9248.t1 | PANTHER | PTHR16004:SF2 | E3 UBIQUITIN-PROTEIN LIGASE RNF31 | 97 | 1242 | 0.0 |
| 5 | g9248.t1 | PANTHER | PTHR16004 | RING FINGER PROTEIN 31-RELATED | 2468 | 2907 | 0.0 |
| 7 | g9248.t1 | PANTHER | PTHR16004:SF2 | E3 UBIQUITIN-PROTEIN LIGASE RNF31 | 2468 | 2907 | 0.0 |
| 2 | g9248.t1 | Pfam | PF16678 | HOIP UBA domain pair | 1088 | 1233 | 9.5E-52 |
| 3 | g9248.t1 | Pfam | PF01485 | IBR domain, a half RING-finger domain | 2622 | 2682 | 1.8E-8 |
| 1 | g9248.t1 | Pfam | PF18091 | E3 Ubiquitin Ligase RBR C-terminal domain | 2782 | 2874 | 9.8E-22 |
| 24 | g9248.t1 | ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 782 | 801 | - |
| 61 | g9248.t1 | ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 2534 | 2770 | 26.42 |
| 60 | g9248.t1 | ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 2538 | 2587 | 10.586 |
| 20 | g9248.t1 | SMART | SM00547 | zf_4 | 780 | 805 | 2.0E-4 |
| 22 | g9248.t1 | SMART | SM00184 | ring_2 | 2538 | 2586 | 0.083 |
| 21 | g9248.t1 | SMART | SM00647 | ibrneu5 | 2620 | 2682 | 5.0E-14 |
| 23 | g9248.t1 | SMART | SM00184 | ring_2 | 2712 | 2742 | 5.4 |
| 8 | g9248.t1 | SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 778 | 805 | 6.67E-5 |
| 10 | g9248.t1 | SUPERFAMILY | SSF57850 | RING/U-box | 2537 | 2594 | 4.69E-11 |
| 9 | g9248.t1 | SUPERFAMILY | SSF57850 | RING/U-box | 2622 | 2689 | 9.89E-13 |
| 11 | g9248.t1 | SUPERFAMILY | SSF57850 | RING/U-box | 2701 | 2771 | 2.05E-7 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0071797 | LUBAC complex | CC |
| GO:0004842 | ubiquitin-protein transferase activity | MF |
KEGG
Orthology
- This transcript has been annotated with K11974 (E3 ubiquitin-protein ligase RNF31)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed