Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g925 g925.t1 TTS g925.t1 6877618 6877618
chr_3 g925 g925.t1 isoform g925.t1 6877647 6878867
chr_3 g925 g925.t1 exon g925.t1.exon1 6877647 6878867
chr_3 g925 g925.t1 cds g925.t1.CDS1 6877647 6878867
chr_3 g925 g925.t1 TSS g925.t1 6879306 6879306

Sequences

>g925.t1 Gene=g925 Length=1221
ATGCATCTACAGACAAAAATGAAGCAAACAATTGACTGTTATTATAACAATGGAAATTGG
GCTTTACACAAAGGAGCATATGAATGTAGGATTGTAAATCAAATAATTATCGATTCAAAC
AATGCAGAATATGAATTTCGTGGTGTACAAAAATATGAAATGACTAATAATGATGTGATG
GGAATAAATTTTATCAGATGTACGATGACAAGAGTTCCGAAAGGTTTAATAAAAATCTTT
CCAAATGCAAAATTTCTTCAATTATGGGATTGCAAATTGAAATCAGTTGAACGTGAAGAT
TTGAAAGAATTTTCAAAATTTACTGATTTGACTATTGTGTTTAATGAAATTCCTTTTATA
CCTGGTGATTTATTAGCTGATATGAAAGATTTAATTGGAGTTTGGTTACATGACAATAAG
ACTCAAATAATTGAGCCAAATATTCTTGATGGACTTGATAATTTGATTATTGCTGATTTT
TCGAATAATCTTTGTATTGATAAAAAATTTGATAATTTAGAAGAAAGAGGAAATGCAACA
CTTAATGAACTTAAAAATGAAATTAGAATAACTTATCATAATTCTCCATGGAAATCAATT
TTTGAGAAAATTAAACAACTTGAAGTGGAAATCGAAAGAATGGCAGAAAAGTCTACTAGT
AAGGTTGCTGATGACATTTTAAAGATCATGCAGTATGACAATTTCAAAGATTTTACAATT
TTTGTTAACGGTGAAAAATTTAAAGCTCATAAACTAGTATTGGCTTCTAGAAGTCCAGTT
TTTGCTGAAACAATTCAAAGTGATATTCATGCTGAATATTTGAATCTTAATGACATTTCA
TGTGAAATTTTTCGAGAAATTCTTAACTTTATTTATACTGATGAATTTCCAAAATCAGAT
GACATTGATTTTGTCAAAATTTTCATTGCTGCAAGTCGTTTGAAATTAACGAAACTCAAA
GATTTTGCTTCTGATAAATTGATAGAAATTATCAATGATAAAAATGCATTAGACTTTCTC
GACTTGGCCAACAAATTTGAAAATCAAAAACTCAAACAAAAATCATTTGAAAAAATCAAA
AAATTGTTGGAAGGAATTCAAATTGATGATAATTTGGCAGGAAATGTTGTAAAATTGAAG
AAAATTCTAGAGATAAAGAAACAAAAAGAAGAAATCATTAAAGCAATGGATGATGAAATT
TTACAAATGTTAAAAATTTAA

>g925.t1 Gene=g925 Length=406
MHLQTKMKQTIDCYYNNGNWALHKGAYECRIVNQIIIDSNNAEYEFRGVQKYEMTNNDVM
GINFIRCTMTRVPKGLIKIFPNAKFLQLWDCKLKSVEREDLKEFSKFTDLTIVFNEIPFI
PGDLLADMKDLIGVWLHDNKTQIIEPNILDGLDNLIIADFSNNLCIDKKFDNLEERGNAT
LNELKNEIRITYHNSPWKSIFEKIKQLEVEIERMAEKSTSKVADDILKIMQYDNFKDFTI
FVNGEKFKAHKLVLASRSPVFAETIQSDIHAEYLNLNDISCEIFREILNFIYTDEFPKSD
DIDFVKIFIAASRLKLTKLKDFASDKLIEIINDKNALDFLDLANKFENQKLKQKSFEKIK
KLLEGIQIDDNLAGNVVKLKKILEIKKQKEEIIKAMDDEILQMLKI

Protein features from InterProScan

Transcript Database ID Name Start End E.value
9 g925.t1 CDD cd18186 BTB_POZ_ZBTB_KLHL-like 237 314 0.00
6 g925.t1 Gene3D G3DSA:3.80.10.10 Ribonuclease Inhibitor 4 206 0.00
7 g925.t1 Gene3D G3DSA:3.30.710.10 Potassium Channel Kv1.1; Chain A 207 361 0.00
2 g925.t1 PANTHER PTHR24413 SPECKLE-TYPE POZ PROTEIN 198 360 0.00
1 g925.t1 Pfam PF00651 BTB/POZ domain 230 329 0.00
8 g925.t1 ProSiteProfiles PS50097 BTB domain profile. 236 300 17.19
5 g925.t1 SMART SM00225 BTB_4 236 331 0.00
3 g925.t1 SUPERFAMILY SSF52058 L domain-like 59 166 0.00
4 g925.t1 SUPERFAMILY SSF54695 POZ domain 220 330 0.00

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005515 protein binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values