Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g925 g925.t2 TTS g925.t2 6877618 6877618
chr_3 g925 g925.t2 isoform g925.t2 6877647 6879100
chr_3 g925 g925.t2 exon g925.t2.exon1 6877647 6878855
chr_3 g925 g925.t2 cds g925.t2.CDS1 6877647 6878849
chr_3 g925 g925.t2 exon g925.t2.exon2 6879099 6879100
chr_3 g925 g925.t2 TSS g925.t2 6879306 6879306

Sequences

>g925.t2 Gene=g925 Length=1211
AAACAAAAATGAAGCAAACAATTGACTGTTATTATAACAATGGAAATTGGGCTTTACACA
AAGGAGCATATGAATGTAGGATTGTAAATCAAATAATTATCGATTCAAACAATGCAGAAT
ATGAATTTCGTGGTGTACAAAAATATGAAATGACTAATAATGATGTGATGGGAATAAATT
TTATCAGATGTACGATGACAAGAGTTCCGAAAGGTTTAATAAAAATCTTTCCAAATGCAA
AATTTCTTCAATTATGGGATTGCAAATTGAAATCAGTTGAACGTGAAGATTTGAAAGAAT
TTTCAAAATTTACTGATTTGACTATTGTGTTTAATGAAATTCCTTTTATACCTGGTGATT
TATTAGCTGATATGAAAGATTTAATTGGAGTTTGGTTACATGACAATAAGACTCAAATAA
TTGAGCCAAATATTCTTGATGGACTTGATAATTTGATTATTGCTGATTTTTCGAATAATC
TTTGTATTGATAAAAAATTTGATAATTTAGAAGAAAGAGGAAATGCAACACTTAATGAAC
TTAAAAATGAAATTAGAATAACTTATCATAATTCTCCATGGAAATCAATTTTTGAGAAAA
TTAAACAACTTGAAGTGGAAATCGAAAGAATGGCAGAAAAGTCTACTAGTAAGGTTGCTG
ATGACATTTTAAAGATCATGCAGTATGACAATTTCAAAGATTTTACAATTTTTGTTAACG
GTGAAAAATTTAAAGCTCATAAACTAGTATTGGCTTCTAGAAGTCCAGTTTTTGCTGAAA
CAATTCAAAGTGATATTCATGCTGAATATTTGAATCTTAATGACATTTCATGTGAAATTT
TTCGAGAAATTCTTAACTTTATTTATACTGATGAATTTCCAAAATCAGATGACATTGATT
TTGTCAAAATTTTCATTGCTGCAAGTCGTTTGAAATTAACGAAACTCAAAGATTTTGCTT
CTGATAAATTGATAGAAATTATCAATGATAAAAATGCATTAGACTTTCTCGACTTGGCCA
ACAAATTTGAAAATCAAAAACTCAAACAAAAATCATTTGAAAAAATCAAAAAATTGTTGG
AAGGAATTCAAATTGATGATAATTTGGCAGGAAATGTTGTAAAATTGAAGAAAATTCTAG
AGATAAAGAAACAAAAAGAAGAAATCATTAAAGCAATGGATGATGAAATTTTACAAATGT
TAAAAATTTAA

>g925.t2 Gene=g925 Length=400
MKQTIDCYYNNGNWALHKGAYECRIVNQIIIDSNNAEYEFRGVQKYEMTNNDVMGINFIR
CTMTRVPKGLIKIFPNAKFLQLWDCKLKSVEREDLKEFSKFTDLTIVFNEIPFIPGDLLA
DMKDLIGVWLHDNKTQIIEPNILDGLDNLIIADFSNNLCIDKKFDNLEERGNATLNELKN
EIRITYHNSPWKSIFEKIKQLEVEIERMAEKSTSKVADDILKIMQYDNFKDFTIFVNGEK
FKAHKLVLASRSPVFAETIQSDIHAEYLNLNDISCEIFREILNFIYTDEFPKSDDIDFVK
IFIAASRLKLTKLKDFASDKLIEIINDKNALDFLDLANKFENQKLKQKSFEKIKKLLEGI
QIDDNLAGNVVKLKKILEIKKQKEEIIKAMDDEILQMLKI

Protein features from InterProScan

Transcript Database ID Name Start End E.value
9 g925.t2 CDD cd18186 BTB_POZ_ZBTB_KLHL-like 231 308 0.00
6 g925.t2 Gene3D G3DSA:3.80.10.10 Ribonuclease Inhibitor 17 200 0.00
7 g925.t2 Gene3D G3DSA:3.30.710.10 Potassium Channel Kv1.1; Chain A 201 355 0.00
2 g925.t2 PANTHER PTHR24413 SPECKLE-TYPE POZ PROTEIN 192 354 0.00
1 g925.t2 Pfam PF00651 BTB/POZ domain 224 323 0.00
8 g925.t2 ProSiteProfiles PS50097 BTB domain profile. 230 294 17.19
5 g925.t2 SMART SM00225 BTB_4 230 325 0.00
3 g925.t2 SUPERFAMILY SSF52058 L domain-like 54 160 0.00
4 g925.t2 SUPERFAMILY SSF54695 POZ domain 214 324 0.00

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005515 protein binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values