General information for g926.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g926 is located on chr_3: 6882754..6883986 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g926 | g926.t1 | isoform | g926.t1 | 6882754 | 6883986 |
| chr_3 | g926 | g926.t1 | exon | g926.t1.exon1 | 6882754 | 6883986 |
| chr_3 | g926 | g926.t1 | cds | g926.t1.CDS1 | 6882754 | 6883986 |
| chr_3 | g926 | g926.t1 | TSS | g926.t1 | NA | NA |
| chr_3 | g926 | g926.t1 | TTS | g926.t1 | NA | NA |
Sequences
>g926.t1 Gene=g926 Length=1233
ATGGAGCAAAAATTAATTGGAGAATTTACAAAAAATTTCAACTGGAGATGTACTAGAGAA
AATTATACTTATCAAGTCACAAATCAAATTATATCAAATCAAAACATTTCGAAAGTAAAA
GGAAGTCATAAATTTGGAAAAAATAATAAGGACGTATGTGGAGTTTTGTTCCAATTTTGC
AATATCAAAGAAATTCCAAAAGGTTTAACAAAAATTTTCCCAAACTTGAAATACCTTGGA
ATTGTAAATTCTAATTTGAAAATTGTAACACGGAACGATCTGAAAAAATTTACAAATTTG
GAAATTTTGTTCTTAAGAGGAAATGAGATTACTTACTTACCTGGAGATCTCCTTCAAGAT
TTAAATGATTTGGAAGTTTTTGTTGTGAGTGTTTCAAAAATAGAAATAATTGAACCAAAC
ATTTTTGATAATTGCAAGAAGTTGAAGCATGTTGATTTAAGAGGAAATTTCTGTATCGAT
AAATGCTTCAGTTCAGTTTATCCTGATTTGCAAAATGCAACAATGGAAGAAATTAAAGAA
AAATTGCAAAAAATTTACCCATTATGGGGAGAAAAAGTGAAAAATTTTAAAGGTGAAATT
ACTTCAGAAACCCTAAAATTGATAAAAGAAAATTTAAGGTATGTCAAAGCTATCAACAGT
CTTATAATGGAAAAGAATTTCATTAAATCCAATTTTGAAAAATTTAGAAATGAAAGTAAG
AAAGAAATTGAAATTTTGAAAGAAAAATTATCTGAAATCGAAGCAAAAAATTCAAATTCC
GAATCAAATTTTACTCAAAACTTCAAAACATTAATGAAAAATGAAGAACTGAAAGATTTC
ACTATCAAAACTGAACTTGAAGAATTCAAAGCTCACAAATTTGTGCTAGCAGCTCGTAGT
CCAGTTTTCGCTAACATTATTAAGGAAAATGTCAATGCTGAATATTTGAATCTTCTTGAT
GTCTCAAGTGATGTTTTTCGAGTTATTTTGGACTTCATTTATACTGATGAACTTTCTGAA
AACATTGAAATTAACTTTATTGAATTATTAATAGCTAGTGAACGATTGAAAATTGAAAAT
TTGAAAAATATCGCTGAAGAAAAACTGATGGATGAAATCAATTCTGAAAATGCTTACGAA
TTTCTAACATTGAGCACAAAAATCGAATGTGAAAAATTGAGACAAAAGGCATTTGAAGAA
ATTAAGAAATATTATGAAGATGATGGAAATTGA
>g926.t1 Gene=g926 Length=410
MEQKLIGEFTKNFNWRCTRENYTYQVTNQIISNQNISKVKGSHKFGKNNKDVCGVLFQFC
NIKEIPKGLTKIFPNLKYLGIVNSNLKIVTRNDLKKFTNLEILFLRGNEITYLPGDLLQD
LNDLEVFVVSVSKIEIIEPNIFDNCKKLKHVDLRGNFCIDKCFSSVYPDLQNATMEEIKE
KLQKIYPLWGEKVKNFKGEITSETLKLIKENLRYVKAINSLIMEKNFIKSNFEKFRNESK
KEIEILKEKLSEIEAKNSNSESNFTQNFKTLMKNEELKDFTIKTELEEFKAHKFVLAARS
PVFANIIKENVNAEYLNLLDVSSDVFRVILDFIYTDELSENIEINFIELLIASERLKIEN
LKNIAEEKLMDEINSENAYEFLTLSTKIECEKLRQKAFEEIKKYYEDDGN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 10 | g926.t1 | CDD | cd18186 | BTB_POZ_ZBTB_KLHL-like | 279 | 356 | 1.14808E-21 |
| 9 | g926.t1 | Coils | Coil | Coil | 236 | 263 | - |
| 7 | g926.t1 | Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 11 | 188 | 4.6E-19 |
| 8 | g926.t1 | Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 246 | 404 | 1.9E-33 |
| 3 | g926.t1 | PANTHER | PTHR26379:SF309 | OS02G0311150 PROTEIN | 253 | 399 | 9.9E-27 |
| 4 | g926.t1 | PANTHER | PTHR26379 | BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 | 253 | 399 | 9.9E-27 |
| 1 | g926.t1 | Pfam | PF13855 | Leucine rich repeat | 98 | 156 | 1.3E-8 |
| 2 | g926.t1 | Pfam | PF00651 | BTB/POZ domain | 268 | 369 | 7.9E-21 |
| 12 | g926.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 99 | 120 | 7.003 |
| 13 | g926.t1 | ProSiteProfiles | PS50097 | BTB domain profile. | 278 | 342 | 16.859 |
| 11 | g926.t1 | SMART | SM00225 | BTB_4 | 278 | 373 | 7.7E-19 |
| 5 | g926.t1 | SUPERFAMILY | SSF52058 | L domain-like | 50 | 158 | 7.48E-18 |
| 6 | g926.t1 | SUPERFAMILY | SSF54695 | POZ domain | 258 | 371 | 3.85E-23 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed