General information for g9263.t5
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g9263 is located on chr_1: 1362997..1365044 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9263 | g9263.t5 | TTS | g9263.t5 | 1360921 | 1360921 |
| chr_1 | g9263 | g9263.t5 | isoform | g9263.t5 | 1361539 | 1363685 |
| chr_1 | g9263 | g9263.t5 | exon | g9263.t5.exon1 | 1361539 | 1362541 |
| chr_1 | g9263 | g9263.t5 | cds | g9263.t5.CDS1 | 1362485 | 1362541 |
| chr_1 | g9263 | g9263.t5 | exon | g9263.t5.exon2 | 1362601 | 1362790 |
| chr_1 | g9263 | g9263.t5 | cds | g9263.t5.CDS2 | 1362601 | 1362790 |
| chr_1 | g9263 | g9263.t5 | exon | g9263.t5.exon3 | 1362853 | 1362913 |
| chr_1 | g9263 | g9263.t5 | cds | g9263.t5.CDS3 | 1362853 | 1362913 |
| chr_1 | g9263 | g9263.t5 | exon | g9263.t5.exon4 | 1362992 | 1363685 |
| chr_1 | g9263 | g9263.t5 | cds | g9263.t5.CDS4 | 1362992 | 1363445 |
| chr_1 | g9263 | g9263.t5 | TSS | g9263.t5 | NA | NA |
Sequences
>g9263.t5 Gene=g9263 Length=1948
CCACGTTCAACTTTCCAAAATCGTCATGAATCGAGCAATGATGGTGGCAATGATTCAAAT
TGGAGATTGGGTGAACGACCAAATGATTCACCTCCACCAGAAAGACGTCGTTATGGTAAT
GATAGACGCGATGGTGAAGGTGGAAGGAGAGGACGATATAATGATCGTGAACAACGCGAA
CAAGTGCAAGAAGAACGTCCAAAATTAAATCTTGCACCAAGAACTTTGCCACTTCCAGAA
ATGAATTTCCCTAAAGAAGAAGAACTTGAGCGTAATACGAGAAAAATTTCATTAAATGGC
GATAGAGATCATAGTCATGATGATTCAGGTCTTGCAGAAGATGATGAGTCAGAAAGTAAA
GAGATAGCACCAAAACCAAAGCCAGTTCCAGTTCCAAGAGAAAATGTTTTTGGTTCAGCT
AAACCAGTCGATACTACTGCAAGAGAACGTGAAATAGAAGAAAAAATGGAGCAAGAACGT
CAAGAAAAGTTAAAAGCTGAAAAGGAAAAGCGAATGAAGGAGAGAGAAACAACATCACAA
TCAGACACTAGTAATAAGGATGTCATTGTGATTCGAACGGAAAGTTCACGGCGACAAGAT
GGCGAAACTAATTGGCGAAAACGCGATGAAAATTCATCAAATGGATTTCATGACAATAAA
AGTCGTGGCGGAGGAAATCGTCAAATGGGCAGAAGTGACGATCGTCCACGACAATTTAAT
AAAGATAATCGCGATAATCGAAACTTTAATAATCGTGGTGGTGGAATGAATCGCGATCGA
AGAGATAGGGATAACAATATGAGAAGAGGCAATGATCAAGGGATGCGTCGCAATAATGAC
TATCATAATTCTGGTGGAAATGAAATGCGACGAGAAGAGCGTGAACGTGAACCAAGGCGT
GAAAGAAATTATGAAATGCCGAAATATGTTGAAAATTCAGGACCTAACTTAAAAACTTCA
AACTTATTTGATGGTTTGGATGAAGAAGTTAATGATGACTAAATAATAAAAACAATGATG
ATGATAATGATTATTAAAATCGGAACATTGCTTTTAAAACGATTAATGAGAGGAAAATTA
TACACATACAGAAAAACAAATTTATAAATGAAATGTGGTTGGGTGTATTAAAGAAAAAGA
AAAAAAGTAAAAACCATTATTTAGGGATAAATCGAGAAAAATCTAACTAAAAATTCAAAG
AGAAAAAAATATCTGTCGACTGAATTAATCAATCCAAGAAGAAAATATATAAATATTATT
ACATACAAAAGAGTGGGCGAACTGTAAAATATTTTAAAAGATTCGAGTAATATTGATTAC
AAAAAAAGAAGTAATAGCGAGCAAAGGAAATCATTTAAAAAGTCGTGGATAGACATAGGG
TGTAAATTGAAATTTGAACTTTCAAAAGAAAATTTAAGAAAAAGTTTAGCAATTTTCATT
TTTTTTTCTAGAACATAATATTAAATAATAATCGTTATATTATTTGAGTTGTCTTATTTT
ATAATCATTTAGAAACACTATATATATAGTAATCATCAAATAATATTACATAAATAAATT
TTTTTAAATATGTCAATATACAACATTAGATTATCTTCCCCAACTTTGAGTTTTATGTTT
TCTTTTCATTTGCAATAATGATGATAAGCATTTGATTTAAAGTTGGGGAAGAATAAGAAA
CAGCAAGAAAAAAGGAAGAAATTAAAATATTAAATTAAATATGAATGAATTATTGAGATA
TCTGTAAGAGAACATTTCATGGATGAGATAAGAAAGTGAGAAAGGATAAGATAGGGTAAC
GATTCATGCAAAGTTAGAATTTAAGAAATAATTTTTCTTTTGTTATACTAATTAATGATC
CATTTTTTCTAAATATGGAAAAAATGAAATATAGAAAATTAAATTTATGTAAATGTCCAC
TGTTTAACTTCTTTTTTTTTTTGTCACA
>g9263.t5 Gene=g9263 Length=253
MNFPKEEELERNTRKISLNGDRDHSHDDSGLAEDDESESKEIAPKPKPVPVPRENVFGSA
KPVDTTAREREIEEKMEQERQEKLKAEKEKRMKERETTSQSDTSNKDVIVIRTESSRRQD
GETNWRKRDENSSNGFHDNKSRGGGNRQMGRSDDRPRQFNKDNRDNRNFNNRGGGMNRDR
RDRDNNMRRGNDQGMRRNNDYHNSGGNEMRREEREREPRRERNYEMPKYVENSGPNLKTS
NLFDGLDEEVNDD
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g9263.t5 | Coils | Coil | Coil | 69 | 96 | - |
| 5 | g9263.t5 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 253 | - |
| 6 | g9263.t5 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 43 | - |
| 2 | g9263.t5 | MobiDBLite | mobidb-lite | consensus disorder prediction | 64 | 101 | - |
| 4 | g9263.t5 | MobiDBLite | mobidb-lite | consensus disorder prediction | 111 | 136 | - |
| 1 | g9263.t5 | MobiDBLite | mobidb-lite | consensus disorder prediction | 147 | 196 | - |
| 3 | g9263.t5 | MobiDBLite | mobidb-lite | consensus disorder prediction | 203 | 227 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
