General information for g9263.t6
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g9263 is located on chr_1: 1362997..1365044 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9263 | g9263.t6 | TTS | g9263.t6 | 1362354 | 1362354 |
| chr_1 | g9263 | g9263.t6 | isoform | g9263.t6 | 1362485 | 1365044 |
| chr_1 | g9263 | g9263.t6 | exon | g9263.t6.exon1 | 1362485 | 1362541 |
| chr_1 | g9263 | g9263.t6 | cds | g9263.t6.CDS1 | 1362485 | 1362541 |
| chr_1 | g9263 | g9263.t6 | exon | g9263.t6.exon2 | 1362601 | 1362790 |
| chr_1 | g9263 | g9263.t6 | cds | g9263.t6.CDS2 | 1362601 | 1362790 |
| chr_1 | g9263 | g9263.t6 | exon | g9263.t6.exon3 | 1362853 | 1362913 |
| chr_1 | g9263 | g9263.t6 | cds | g9263.t6.CDS3 | 1362853 | 1362913 |
| chr_1 | g9263 | g9263.t6 | exon | g9263.t6.exon4 | 1362992 | 1364311 |
| chr_1 | g9263 | g9263.t6 | cds | g9263.t6.CDS4 | 1362992 | 1363445 |
| chr_1 | g9263 | g9263.t6 | exon | g9263.t6.exon5 | 1365032 | 1365044 |
| chr_1 | g9263 | g9263.t6 | TSS | g9263.t6 | NA | NA |
Sequences
>g9263.t6 Gene=g9263 Length=1641
ATGGCAAGCACTGGTAAAAAAGGCAAAAAGTCCAAAGAAAAGAAATTGTCTCTTCAAGAC
TTTTTAGCAAAATCAAATCCACAAACGGGTAGTGGAACTACTCAAGTTGCTGTTACAAAA
TATAGCAGTTGGGCAGAAGAATGTGAAGAAGATGAGGATCGTAAATTTGAAATTATCCAG
CTACCAACTGCTCCACGCGCTGCTCGAATTTTGGACGATAACTCAATTCCAAATGAAGGT
CCTTTCTATGCACGCGTTTCGAATCTACCCTTCGATATCAATGAAGGAGATGTTGATGAA
TTTTTTCTCGATCAGAACATTCATATACGTGAAATGAGATTGGCGCGTGATGAACAAAAT
GATCGTCTTCGTGGATACGGTCATATTGAGTTTGAAACACGAGATGATCTTTTAGATGCC
ATTATGCTTACTGATCCAATGATTCGCAACAGAAGAATTCGAATTGAGTTCACTGCAGAG
CCCGATAATAGTAGTGGTAGGACTGTTCGTAAACGCTATGACAATTATACACCACGTGAT
TCGGCAAATGAATCAACAAATTGGCGCGATCGAAAAGAATCTAATTTCGAGGCAGTGGAT
TCACGCGATAATAGAGAAAATCGTCGACGCAACTATTAGCCACGTTCAACTTTCCAAAAT
CGTCATGAATCGAGCAATGATGGTGGCAATGATTCAAATTGGAGATTGGGTGAACGACCA
AATGATTCACCTCCACCAGAAAGACGTCGTTATGGTAATGATAGACGCGATGGTGAAGGT
GGAAGGAGAGGACGATATAATGATCGTGAACAACGCGAACAAGTGCAAGAAGAACGTCCA
AAATTAAATCTTGCACCAAGAACTTTGCCACTTCCAGAAATGAATTTCCCTAAAGAAGAA
GAACTTGAGCGTAATACGAGAAAAATTTCATTAAATGGCGATAGAGATCATAGTCATGAT
GATTCAGGTCTTGCAGAAGATGATGAGTCAGAAAGTAAAGAGATAGCACCAAAACCAAAG
CCAGTTCCAGTTCCAAGAGAAAATGTTTTTGGTTCAGCTAAACCAGTCGATACTACTGCA
AGAGAACGTGAAATAGAAGAAAAAATGGAGCAAGAACGTCAAGAAAAGTTAAAAGCTGAA
AAGGAAAAGCGAATGAAGGAGAGAGAAACAACATCACAATCAGACACTAGTAATAAGGAT
GTCATTGTGATTCGAACGGAAAGTTCACGGCGACAAGATGGCGAAACTAATTGGCGAAAA
CGCGATGAAAATTCATCAAATGGATTTCATGACAATAAAAGTCGTGGCGGAGGAAATCGT
CAAATGGGCAGAAGTGACGATCGTCCACGACAATTTAATAAAGATAATCGCGATAATCGA
AACTTTAATAATCGTGGTGGTGGAATGAATCGCGATCGAAGAGATAGGGATAACAATATG
AGAAGAGGCAATGATCAAGGGATGCGTCGCAATAATGACTATCATAATTCTGGTGGAAAT
GAAATGCGACGAGAAGAGCGTGAACGTGAACCAAGGCGTGAAAGAAATTATGAAATGCCG
AAATATGTTGAAAATTCAGGACCTAACTTAAAAACTTCAAACTTATTTGATGGTTTGGAT
GAAGAAGTTAATGATGACTAA
>g9263.t6 Gene=g9263 Length=253
MNFPKEEELERNTRKISLNGDRDHSHDDSGLAEDDESESKEIAPKPKPVPVPRENVFGSA
KPVDTTAREREIEEKMEQERQEKLKAEKEKRMKERETTSQSDTSNKDVIVIRTESSRRQD
GETNWRKRDENSSNGFHDNKSRGGGNRQMGRSDDRPRQFNKDNRDNRNFNNRGGGMNRDR
RDRDNNMRRGNDQGMRRNNDYHNSGGNEMRREEREREPRRERNYEMPKYVENSGPNLKTS
NLFDGLDEEVNDD
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g9263.t6 | Coils | Coil | Coil | 69 | 96 | - |
| 5 | g9263.t6 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 253 | - |
| 6 | g9263.t6 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 43 | - |
| 2 | g9263.t6 | MobiDBLite | mobidb-lite | consensus disorder prediction | 64 | 101 | - |
| 4 | g9263.t6 | MobiDBLite | mobidb-lite | consensus disorder prediction | 111 | 136 | - |
| 1 | g9263.t6 | MobiDBLite | mobidb-lite | consensus disorder prediction | 147 | 196 | - |
| 3 | g9263.t6 | MobiDBLite | mobidb-lite | consensus disorder prediction | 203 | 227 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
