Gene loci information

Transcript annotation

  • This transcript has been annotated as Cell division cycle protein 20-like protein.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g9276 g9276.t1 TTS g9276.t1 1392192 1392192
chr_1 g9276 g9276.t1 isoform g9276.t1 1392339 1394122
chr_1 g9276 g9276.t1 exon g9276.t1.exon1 1392339 1392517
chr_1 g9276 g9276.t1 cds g9276.t1.CDS1 1392339 1392517
chr_1 g9276 g9276.t1 exon g9276.t1.exon2 1392575 1393287
chr_1 g9276 g9276.t1 cds g9276.t1.CDS2 1392575 1393287
chr_1 g9276 g9276.t1 exon g9276.t1.exon3 1393354 1393801
chr_1 g9276 g9276.t1 cds g9276.t1.CDS3 1393354 1393801
chr_1 g9276 g9276.t1 exon g9276.t1.exon4 1393864 1394122
chr_1 g9276 g9276.t1 cds g9276.t1.CDS4 1393864 1394122
chr_1 g9276 g9276.t1 TSS g9276.t1 1394199 1394199

Sequences

>g9276.t1 Gene=g9276 Length=1599
ATGTCAAGATTTAACTATTTGAACGATATGAATAAACAATTAGCTCTTGATGGTGAATTG
AAGAATCAGATTAAACCAAGATGGCAGAGAAAAATGGAAAAATCTATAAATTCTTCAACT
GCATCTACATCAATGCTCAATCAGTCAAAATTATCCGTTTCATATAACAATAGTTATGCT
TCGGCTTTAAACACAACAAATAGCAATAATAAGACACCTAACAAACAAAGCAATGAAAAT
GTAGCAAAAAAATCACCTGGACGAAAAACGCCGACTCCAAACAAAAACTCTTCAAAATCA
CCTTCAAGATCCAATGGCGATCGTTTTATTCCAAATAGAGCTGCAACAAATTTCGAGCTG
GGAAATTATTTAATGAAACAGCAAGATCGAACTGATAATGGTAGTGAAAGCCAAAAATCG
CCAAATGACAAAGTTCGTGCTCTATCTGAAGCATTACATGGATTAGATATATCAAAGAAA
CGTATTCTTGCTTTTCAAAGTAAAGCACCAGCTGCACCTGATTCACATCTAAATCCACTC
AAAGTAATTTATAGTGTTAAAACACCAATGTCATCAAAGAGTGGTACTCGATACATTCCA
ACAAATCCAGAAAGAATTCTGGATGCACCTGACATCAGTAATGACTATTATTTAAATCTT
CTTGACTGGAGTTCTGATAATATTGTGACTGTTGCACTTGGTAAAAGTGTTTATTTATGG
AATGCTGGAACTGGAAATATCGAAATATTATTTGAAAGTCAAGGACAGGATCATGTATGC
TCATTATCATGGATTCAAGAAGGACAAATTCTTGCTGTTGGATTAAGTAATGGCTTACTT
GAGTTATGGGACTGCACAAAAATGAAGAGACTTCGAGTAATGAATGGACATTCGACTCGT
ATTGGTTCATTAGCTTGGAATTCATGGTTAATTTCGAGTGGTTCGAGAGACGGTACAATC
ATTCATCATGATGTACGACAACGTGAACATCAAATTGGTTTATTACAAGGACACACGCAA
GAAGTTTGCGGATTAAAATGGTCGCTTGATGCTAAATATTTGGCAAGTGGTGGAAATGAT
AACTTAGTTAATATTTGGACGACTGAAGGAGCTAATGGAGCAGGAACAAGTTCAACACCA
TTACATCAATTCAATGAACATCAAGCTGCTGTTCGTGCTCTTGCTTGGTGTCCATGGCAG
TCAAACACTCTTGCATCCGGAGGTGGAACAGCTGATAGATGTATTAAATTTTGGAATGTC
AATACTGGAGTATGCATGAATTCTGTTGACACAAAATCCCAAGTGTGTTCATTATTGTTT
TCAAAAACTTATAAGGAACTTATATCAGCTCACGGTTTTGCTAACAATCAATTAACGATT
TGGAAATATCCTTCAATGACACATCAAGTTGATCTCACTGGACATACGGAACGAGTATTA
CAGCTAGCAATGTCACCTGATGGTAGTACAATAATGAGTGCTGGTGCTGACGAAACATTA
CGTTTATGGAAATGCTTTGCGGAAGATCCTAATATGAATAAAAAGAAATCTGCAGCTAAA
GAAAAGACCAGTTTCTTGCTTAAACAAAGCATTCGTTAA

>g9276.t1 Gene=g9276 Length=532
MSRFNYLNDMNKQLALDGELKNQIKPRWQRKMEKSINSSTASTSMLNQSKLSVSYNNSYA
SALNTTNSNNKTPNKQSNENVAKKSPGRKTPTPNKNSSKSPSRSNGDRFIPNRAATNFEL
GNYLMKQQDRTDNGSESQKSPNDKVRALSEALHGLDISKKRILAFQSKAPAAPDSHLNPL
KVIYSVKTPMSSKSGTRYIPTNPERILDAPDISNDYYLNLLDWSSDNIVTVALGKSVYLW
NAGTGNIEILFESQGQDHVCSLSWIQEGQILAVGLSNGLLELWDCTKMKRLRVMNGHSTR
IGSLAWNSWLISSGSRDGTIIHHDVRQREHQIGLLQGHTQEVCGLKWSLDAKYLASGGND
NLVNIWTTEGANGAGTSSTPLHQFNEHQAAVRALAWCPWQSNTLASGGGTADRCIKFWNV
NTGVCMNSVDTKSQVCSLLFSKTYKELISAHGFANNQLTIWKYPSMTHQVDLTGHTERVL
QLAMSPDGSTIMSAGADETLRLWKCFAEDPNMNKKKSAAKEKTSFLLKQSIR

Protein features from InterProScan

Transcript Database ID Name Start End E.value
9 g9276.t1 CDD cd00200 WD40 221 504 4.45888E-42
8 g9276.t1 Gene3D G3DSA:2.130.10.10 - 158 507 1.0E-126
18 g9276.t1 MobiDBLite mobidb-lite consensus disorder prediction 64 110 -
5 g9276.t1 PANTHER PTHR19918 CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED 15 532 2.0E-178
6 g9276.t1 PANTHER PTHR19918:SF3 CELL DIVISION CYCLE PROTEIN 20 HOMOLOG 15 532 2.0E-178
4 g9276.t1 Pfam PF12894 Anaphase-promoting complex subunit 4 WD40 domain 252 307 4.0E-5
3 g9276.t1 Pfam PF00400 WD domain, G-beta repeat 333 366 1.2E-4
2 g9276.t1 Pfam PF00400 WD domain, G-beta repeat 379 419 0.011
1 g9276.t1 Pfam PF00400 WD domain, G-beta repeat 471 504 3.5E-4
10 g9276.t1 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 406 420 -
19 g9276.t1 ProSiteProfiles PS50294 Trp-Asp (WD) repeats circular profile. 211 513 33.063
20 g9276.t1 ProSiteProfiles PS50082 Trp-Asp (WD) repeats profile. 335 376 13.449
21 g9276.t1 ProSiteProfiles PS50082 Trp-Asp (WD) repeats profile. 472 504 14.552
13 g9276.t1 SMART SM00320 WD40_4 200 241 51.0
15 g9276.t1 SMART SM00320 WD40_4 246 284 0.81
12 g9276.t1 SMART SM00320 WD40_4 287 324 0.011
11 g9276.t1 SMART SM00320 WD40_4 328 367 1.2E-6
16 g9276.t1 SMART SM00320 WD40_4 377 419 3.0E-5
14 g9276.t1 SMART SM00320 WD40_4 422 462 150.0
17 g9276.t1 SMART SM00320 WD40_4 465 504 5.8E-6
7 g9276.t1 SUPERFAMILY SSF50978 WD40 repeat-like 199 509 8.06E-61

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:1904668 positive regulation of ubiquitin protein ligase activity BP
GO:0097027 ubiquitin-protein transferase activator activity MF
GO:0010997 anaphase-promoting complex binding MF
GO:0005515 protein binding MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values