General information for g9276.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Cell division cycle protein 20-like protein.
Parent gene
- The parent gene g9276 is located on chr_1: 1394122..1395267 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9276 | g9276.t2 | TTS | g9276.t2 | 1392192 | 1392192 |
| chr_1 | g9276 | g9276.t2 | isoform | g9276.t2 | 1392339 | 1393287 |
| chr_1 | g9276 | g9276.t2 | exon | g9276.t2.exon1 | 1392339 | 1392517 |
| chr_1 | g9276 | g9276.t2 | cds | g9276.t2.CDS1 | 1392339 | 1392517 |
| chr_1 | g9276 | g9276.t2 | exon | g9276.t2.exon2 | 1392575 | 1393287 |
| chr_1 | g9276 | g9276.t2 | cds | g9276.t2.CDS2 | 1392575 | 1393133 |
| chr_1 | g9276 | g9276.t2 | TSS | g9276.t2 | 1394199 | 1394199 |
Sequences
>g9276.t2 Gene=g9276 Length=892
TGTTTATTTATGGAATGCTGGAACTGGAAATATCGAAATATTATTTGAAAGTCAAGGACA
GGATCATGTATGCTCATTATCATGGATTCAAGAAGGACAAATTCTTGCTGTTGGATTAAG
TAATGGCTTACTTGAGTTATGGGACTGCACAAAAATGAAGAGACTTCGAGTAATGAATGG
ACATTCGACTCGTATTGGTTCATTAGCTTGGAATTCATGGTTAATTTCGAGTGGTTCGAG
AGACGGTACAATCATTCATCATGATGTACGACAACGTGAACATCAAATTGGTTTATTACA
AGGACACACGCAAGAAGTTTGCGGATTAAAATGGTCGCTTGATGCTAAATATTTGGCAAG
TGGTGGAAATGATAACTTAGTTAATATTTGGACGACTGAAGGAGCTAATGGAGCAGGAAC
AAGTTCAACACCATTACATCAATTCAATGAACATCAAGCTGCTGTTCGTGCTCTTGCTTG
GTGTCCATGGCAGTCAAACACTCTTGCATCCGGAGGTGGAACAGCTGATAGATGTATTAA
ATTTTGGAATGTCAATACTGGAGTATGCATGAATTCTGTTGACACAAAATCCCAAGTGTG
TTCATTATTGTTTTCAAAAACTTATAAGGAACTTATATCAGCTCACGGTTTTGCTAACAA
TCAATTAACGATTTGGAAATATCCTTCAATGACACATCAAGTTGATCTCACTGGACATAC
GGAACGAGTATTACAGCTAGCAATGTCACCTGATGGTAGTACAATAATGAGTGCTGGTGC
TGACGAAACATTACGTTTATGGAAATGCTTTGCGGAAGATCCTAATATGAATAAAAAGAA
ATCTGCAGCTAAAGAAAAGACCAGTTTCTTGCTTAAACAAAGCATTCGTTAA
>g9276.t2 Gene=g9276 Length=245
MKRLRVMNGHSTRIGSLAWNSWLISSGSRDGTIIHHDVRQREHQIGLLQGHTQEVCGLKW
SLDAKYLASGGNDNLVNIWTTEGANGAGTSSTPLHQFNEHQAAVRALAWCPWQSNTLASG
GGTADRCIKFWNVNTGVCMNSVDTKSQVCSLLFSKTYKELISAHGFANNQLTIWKYPSMT
HQVDLTGHTERVLQLAMSPDGSTIMSAGADETLRLWKCFAEDPNMNKKKSAAKEKTSFLL
KQSIR
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 14 | g9276.t2 | Gene3D | G3DSA:2.130.10.10 | - | 1 | 220 | 2.2E-84 |
| 5 | g9276.t2 | PANTHER | PTHR19918 | CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED | 2 | 245 | 1.5E-111 |
| 6 | g9276.t2 | PANTHER | PTHR19918:SF3 | CELL DIVISION CYCLE PROTEIN 20 HOMOLOG | 2 | 245 | 1.5E-111 |
| 4 | g9276.t2 | Pfam | PF00400 | WD domain, G-beta repeat | 3 | 33 | 0.041 |
| 3 | g9276.t2 | Pfam | PF00400 | WD domain, G-beta repeat | 46 | 79 | 4.1E-5 |
| 2 | g9276.t2 | Pfam | PF00400 | WD domain, G-beta repeat | 92 | 132 | 0.0038 |
| 1 | g9276.t2 | Pfam | PF00400 | WD domain, G-beta repeat | 184 | 217 | 1.2E-4 |
| 13 | g9276.t2 | ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 119 | 133 | - |
| 15 | g9276.t2 | ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 7 | 226 | 26.498 |
| 17 | g9276.t2 | ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 48 | 89 | 13.449 |
| 16 | g9276.t2 | ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 185 | 217 | 14.552 |
| 10 | g9276.t2 | SMART | SM00320 | WD40_4 | 1 | 37 | 3.4 |
| 12 | g9276.t2 | SMART | SM00320 | WD40_4 | 41 | 80 | 1.2E-6 |
| 11 | g9276.t2 | SMART | SM00320 | WD40_4 | 90 | 132 | 3.0E-5 |
| 9 | g9276.t2 | SMART | SM00320 | WD40_4 | 135 | 175 | 150.0 |
| 8 | g9276.t2 | SMART | SM00320 | WD40_4 | 178 | 217 | 5.8E-6 |
| 7 | g9276.t2 | SUPERFAMILY | SSF50978 | WD40 repeat-like | 2 | 222 | 2.6E-48 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:1904668 | positive regulation of ubiquitin protein ligase activity | BP |
| GO:0097027 | ubiquitin-protein transferase activator activity | MF |
| GO:0010997 | anaphase-promoting complex binding | MF |
| GO:0005515 | protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
