General information for g9318.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Neuropeptides capa receptor.
Parent gene
- The parent gene g9318 is located on chr_1: 1809852..1828445 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9318 | g9318.t1 | isoform | g9318.t1 | 1809852 | 1828445 |
| chr_1 | g9318 | g9318.t1 | exon | g9318.t1.exon1 | 1809852 | 1810433 |
| chr_1 | g9318 | g9318.t1 | cds | g9318.t1.CDS1 | 1809852 | 1810433 |
| chr_1 | g9318 | g9318.t1 | exon | g9318.t1.exon2 | 1812284 | 1812403 |
| chr_1 | g9318 | g9318.t1 | cds | g9318.t1.CDS2 | 1812284 | 1812403 |
| chr_1 | g9318 | g9318.t1 | exon | g9318.t1.exon3 | 1812467 | 1812659 |
| chr_1 | g9318 | g9318.t1 | cds | g9318.t1.CDS3 | 1812467 | 1812659 |
| chr_1 | g9318 | g9318.t1 | exon | g9318.t1.exon4 | 1815560 | 1815654 |
| chr_1 | g9318 | g9318.t1 | cds | g9318.t1.CDS4 | 1815560 | 1815654 |
| chr_1 | g9318 | g9318.t1 | exon | g9318.t1.exon5 | 1815725 | 1815774 |
| chr_1 | g9318 | g9318.t1 | cds | g9318.t1.CDS5 | 1815725 | 1815774 |
| chr_1 | g9318 | g9318.t1 | exon | g9318.t1.exon6 | 1819052 | 1819123 |
| chr_1 | g9318 | g9318.t1 | cds | g9318.t1.CDS6 | 1819052 | 1819123 |
| chr_1 | g9318 | g9318.t1 | exon | g9318.t1.exon7 | 1820828 | 1821004 |
| chr_1 | g9318 | g9318.t1 | cds | g9318.t1.CDS7 | 1820828 | 1821004 |
| chr_1 | g9318 | g9318.t1 | exon | g9318.t1.exon8 | 1822341 | 1822540 |
| chr_1 | g9318 | g9318.t1 | cds | g9318.t1.CDS8 | 1822341 | 1822540 |
| chr_1 | g9318 | g9318.t1 | exon | g9318.t1.exon9 | 1822629 | 1822719 |
| chr_1 | g9318 | g9318.t1 | cds | g9318.t1.CDS9 | 1822629 | 1822719 |
| chr_1 | g9318 | g9318.t1 | exon | g9318.t1.exon10 | 1828370 | 1828445 |
| chr_1 | g9318 | g9318.t1 | cds | g9318.t1.CDS10 | 1828370 | 1828445 |
| chr_1 | g9318 | g9318.t1 | TSS | g9318.t1 | NA | NA |
| chr_1 | g9318 | g9318.t1 | TTS | g9318.t1 | NA | NA |
Sequences
>g9318.t1 Gene=g9318 Length=1656
ATGAGTAGAAATTTTTTTCCTTCAACCCTTTCACGTATTTATATAAACATTGAATTATGG
ATGGAGGAAATTGTTGGTCTGCCGTACGATCTGAGTCTATATTGGCATCAATATCCATAT
AACCTTGGATTACTCATTTGCAAAGTTAGAGCTTTAGTATCAGAGGCATCAACCTACGTT
AGTGTACTCACAATTGTAGCATTTTCAATGGAGAGATTTCTCGCTATATGCCATCCGCTT
CATTTGTACACGATGGCAGGTTTACAGCGTGCTGTTCGCATTATTGCTGCATTGTGGGTC
GTAAGCTTTTTAAGTGCTGTGCCTTTTGCCGTTTTTACAAAAATCCATTATCTAACATAC
CCCAAAACGAATCAAGAAATTCCAGAATCGGCGTTCTGTGCGATGCTCGACAATCCAGAT
AAGTTTCCACTGTGGGAAGTATCGACATGCATTTTCTTCGCATTCCCCATGGTGATCATG
GTGATTCTCTATGGACGCATGGGACTAAAAATACGCTCAAGAACACGCCATACTGTAGCA
TTAGGTGTACAACAAGGCTCAATTCATGGTGAATCGAAGCAGACGCAGTCACGGAAAGCA
ATCATAAGAATGCTGGCGGCTGTCGTCATCACATTTTTTGTATGTTGGGCACCTTTTCAT
GCTCAGCGACTGTGTTATCTATATGGTCGAAATACAGAGTATTTTAACGCACTTAATCAG
TGGCTATTTCCATTGAGTGGTTGGCTGTATTATATATCATGCACAATAAATCCCATTTTA
TATAATGTAATGTCACATCGATATCGAATAGCATTTAGAGAGACACTTTGTAGTCGAAAA
AGAGGATATTATAGCAGCTCAAATGGCTTTGCACGCGATCAATCGAGTTTTCGTGAAACA
ACAATTGCAGGCGCCGGTCGAGATCATAATCTTAATTATGAGTCCTCACAATTGCTACGC
ACGAAATCGATGTTATCACAACGATATTCACGGTACAAGGATCATGGAAGACTGAACAAC
AGCAGTATGCGATGGAAGGAAAATGCGACTGCAAAGCGTGTCGATTCAGTGAAGAGCACA
GACAGCACACAGTCAACGCTTTCAACGAATGGCAGCTCAAATGTAATAGTTGTGTGTATA
GGAAATAGTTTCAAGACCAAATGCATAACAACAGCAAATACTTCACAATCAACAACAACA
TTGACTACATCAACACCACCACCATTATCACCAGCAACTGTCACAACAACAATGTCATCA
CTGGCACCAAATTCTCCATCATTACCACCGCCAATCATCATCAATGGTGGGAATGGGAGA
CAATTTAATAACAATTCAATACACAATGGATCACTTTCGCCCAATTGGCTCGATTCACAA
ATGAATAATTTGCTTGAAGAGGATGAAGACAATTTTACGAATGATGATGAAAATGATGAC
GAAGAAAAATCAAAAAATGACTTTCATCCATCATCAGCACCACCTCAATTACAACAACAA
CCGACATTTTTCTGTACCACCGCAGACGACAGTGAGCGAGCACGTAATGAGCATAATAAT
AAAATCAACTCGCTGACAACAACAACAAAGCACGAACAGCCAAAAAATATATTAATTAAT
TGCTTAAATGACTTAAAAACAGAGACTTGTATATAA
>g9318.t1 Gene=g9318 Length=551
MSRNFFPSTLSRIYINIELWMEEIVGLPYDLSLYWHQYPYNLGLLICKVRALVSEASTYV
SVLTIVAFSMERFLAICHPLHLYTMAGLQRAVRIIAALWVVSFLSAVPFAVFTKIHYLTY
PKTNQEIPESAFCAMLDNPDKFPLWEVSTCIFFAFPMVIMVILYGRMGLKIRSRTRHTVA
LGVQQGSIHGESKQTQSRKAIIRMLAAVVITFFVCWAPFHAQRLCYLYGRNTEYFNALNQ
WLFPLSGWLYYISCTINPILYNVMSHRYRIAFRETLCSRKRGYYSSSNGFARDQSSFRET
TIAGAGRDHNLNYESSQLLRTKSMLSQRYSRYKDHGRLNNSSMRWKENATAKRVDSVKST
DSTQSTLSTNGSSNVIVVCIGNSFKTKCITTANTSQSTTTLTTSTPPPLSPATVTTTMSS
LAPNSPSLPPPIIINGGNGRQFNNNSIHNGSLSPNWLDSQMNNLLEEDEDNFTNDDENDD
EEKSKNDFHPSSAPPQLQQQPTFFCTTADDSERARNEHNNKINSLTTTTKHEQPKNILIN
CLNDLKTETCI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 11 | g9318.t1 | Coils | Coil | Coil | 508 | 528 | - |
| 10 | g9318.t1 | Gene3D | G3DSA:1.20.1070.10 | - | 23 | 286 | 5.7E-63 |
| 28 | g9318.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 340 | 365 | - |
| 30 | g9318.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 393 | 422 | - |
| 29 | g9318.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 471 | 502 | - |
| 2 | g9318.t1 | PANTHER | PTHR24243:SF107 | NEUROPEPTIDES CAPA RECEPTOR | 24 | 300 | 8.8E-116 |
| 3 | g9318.t1 | PANTHER | PTHR24243 | G-PROTEIN COUPLED RECEPTOR | 24 | 300 | 8.8E-116 |
| 6 | g9318.t1 | PRINTS | PR00237 | Rhodopsin-like GPCR superfamily signature | 54 | 76 | 1.9E-23 |
| 7 | g9318.t1 | PRINTS | PR00237 | Rhodopsin-like GPCR superfamily signature | 90 | 111 | 1.9E-23 |
| 5 | g9318.t1 | PRINTS | PR00237 | Rhodopsin-like GPCR superfamily signature | 145 | 168 | 1.9E-23 |
| 4 | g9318.t1 | PRINTS | PR00237 | Rhodopsin-like GPCR superfamily signature | 201 | 225 | 1.9E-23 |
| 8 | g9318.t1 | PRINTS | PR00237 | Rhodopsin-like GPCR superfamily signature | 243 | 269 | 1.9E-23 |
| 1 | g9318.t1 | Pfam | PF00001 | 7 transmembrane receptor (rhodopsin family) | 37 | 261 | 1.7E-37 |
| 17 | g9318.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 58 | - |
| 19 | g9318.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 59 | 80 | - |
| 13 | g9318.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 81 | 91 | - |
| 21 | g9318.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 92 | 112 | - |
| 16 | g9318.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 113 | 143 | - |
| 22 | g9318.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 144 | 164 | - |
| 12 | g9318.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 165 | 199 | - |
| 18 | g9318.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 200 | 221 | - |
| 15 | g9318.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 222 | 240 | - |
| 20 | g9318.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 241 | 263 | - |
| 14 | g9318.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 264 | 551 | - |
| 27 | g9318.t1 | ProSitePatterns | PS00237 | G-protein coupled receptors family 1 signature. | 60 | 76 | - |
| 31 | g9318.t1 | ProSiteProfiles | PS50262 | G-protein coupled receptors family 1 profile. | 1 | 261 | 31.465 |
| 9 | g9318.t1 | SUPERFAMILY | SSF81321 | Family A G protein-coupled receptor-like | 26 | 295 | 1.92E-47 |
| 26 | g9318.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 91 | 113 | - |
| 24 | g9318.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 142 | 164 | - |
| 23 | g9318.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 202 | 221 | - |
| 25 | g9318.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 241 | 263 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0007186 | G protein-coupled receptor signaling pathway | BP |
| GO:0016021 | integral component of membrane | CC |
| GO:0004930 | G protein-coupled receptor activity | MF |
KEGG
Orthology
- This transcript has been annotated with K05052 (neuromedin U receptor 1)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed