Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g9320 g9320.t1 isoform g9320.t1 1837552 1840607
chr_1 g9320 g9320.t1 exon g9320.t1.exon1 1837552 1837728
chr_1 g9320 g9320.t1 cds g9320.t1.CDS1 1837552 1837728
chr_1 g9320 g9320.t1 exon g9320.t1.exon2 1840344 1840607
chr_1 g9320 g9320.t1 cds g9320.t1.CDS2 1840344 1840607
chr_1 g9320 g9320.t1 TSS g9320.t1 NA NA
chr_1 g9320 g9320.t1 TTS g9320.t1 NA NA

Sequences

>g9320.t1 Gene=g9320 Length=441
ATGTTTGAAACAATCACTACAACCACAATATCATCTGCTCCAACATGGATCAGTTTATTG
AATGTGACCACAGCAATTGCAACAACATCGACTGCAATTTTCGATTCAAATCTTACAAAT
TTCGACACAAATGGAACCGATGATGGCAATGGGAGCATTTTCGATCTATGTGATGCTGAA
AATCCTGAATTTAATTGCACAGTAGATGAATATCTTAATCGTTATATGGGCTTAAAGCAA
ATGCCATTACATACTGCAATATGGGTTACAATCTTATATGTTGGAATTTTTGTCACAGGA
TTTATAGGAAATTTGATTGTGTGCGTTGTAATTGTGAAAAATGCTTCTATGCACACAGCT
ACAAATTATTATCTCTTCAGTCTTGCTGTATCGGATCTGATATTTTTGATGATGGGTAAG
TCTTTTTTTATTTATTACTGA

>g9320.t1 Gene=g9320 Length=146
MFETITTTTISSAPTWISLLNVTTAIATTSTAIFDSNLTNFDTNGTDDGNGSIFDLCDAE
NPEFNCTVDEYLNRYMGLKQMPLHTAIWVTILYVGIFVTGFIGNLIVCVVIVKNASMHTA
TNYYLFSLAVSDLIFLMMGKSFFIYY

Protein features from InterProScan

Transcript Database ID Name Start End E.value
8 g9320.t1 Gene3D G3DSA:1.20.1070.10 - 66 146 1.7E-16
2 g9320.t1 PANTHER PTHR24243:SF107 NEUROPEPTIDES CAPA RECEPTOR 58 139 2.2E-25
3 g9320.t1 PANTHER PTHR24243 G-PROTEIN COUPLED RECEPTOR 58 139 2.2E-25
5 g9320.t1 PRINTS PR00237 Rhodopsin-like GPCR superfamily signature 88 112 2.6E-11
4 g9320.t1 PRINTS PR00237 Rhodopsin-like GPCR superfamily signature 121 142 2.6E-11
1 g9320.t1 Pfam PF00001 7 transmembrane receptor (rhodopsin family) 103 144 5.1E-9
10 g9320.t1 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 85 -
12 g9320.t1 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 86 112 -
9 g9320.t1 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 113 123 -
13 g9320.t1 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 124 145 -
11 g9320.t1 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 146 146 -
17 g9320.t1 ProSiteProfiles PS50262 G-protein coupled receptors family 1 profile. 103 146 12.167
6 g9320.t1 SUPERFAMILY SSF81321 Family A G protein-coupled receptor-like 59 139 5.22E-15
7 g9320.t1 SignalP_GRAM_POSITIVE SignalP-TM SignalP-TM 1 27 -
16 g9320.t1 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 12 34 -
14 g9320.t1 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 89 111 -
15 g9320.t1 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 123 145 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0007186 G protein-coupled receptor signaling pathway BP
GO:0016021 integral component of membrane CC
GO:0004930 G protein-coupled receptor activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed