Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Arginase-1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g9339 g9339.t6 TSS g9339.t6 1917570 1917570
chr_1 g9339 g9339.t6 isoform g9339.t6 1917850 1918910
chr_1 g9339 g9339.t6 exon g9339.t6.exon1 1917850 1918910
chr_1 g9339 g9339.t6 cds g9339.t6.CDS1 1918389 1918910
chr_1 g9339 g9339.t6 TTS g9339.t6 1919041 1919041

Sequences

>g9339.t6 Gene=g9339 Length=1061
AATAATATTTAGGTGCGAGTAAGCGTGGAGCAGACAAAGGCCCAAAAGCTTTAAGAGAAT
CGGGACTAATTGATGAGATTAAGCAGATCTCGTCGAATATTGATGTGAAAGATTACGGCG
ATGTTCATTATGAATTAATGAGCTCTAATGGAAGGAAAATTCACAATCTAAATGAGTTGA
ATCATGTTGCTGCATGCAATCGAGCGTTGGCTGAGCGAATAGAGGAGATTTTAAATGATG
AACGAATGCCAATCACCTTAGGCGGTTGTCATAGCATTGCAATTGGTTCAATTAGCGGTG
TTGTGCGAAAGACAGCGCCAGATAATATGTGTGTTTTGTGGATTGATGCACATCTCGATC
TCAATACGAACACAACATCCCCAACGGGTAATGAGAAATTTCAATATAAAAATAGCATGA
ATTTTTAAAGGAATGGAAACTTGATGATTTTATAAAAAGTATTCAAAGTTTCCATTCCCT
TAAAATTCATGCATTGCTTTGAAAAACTAAAAATAACTTTCATCTCTATTTTAGGTAACA
TGCATGGCATGCCAGCAAGTTTAATAGTCAAAGAATTGCGCTCAAATTGGCCTTTTGTGC
CAGAACTCGAATGGTGCAAGGCAGAATTGTCATTGAAAAATTTTTGCTGGATTGGACTAC
GTTCGATTGATTACTATGAACGATTGAGCATGGAAAAGTATGGAATTAAGTACTTTGACA
TGCGCGACATCGATAAGATGGGAATTGACAAGGTAACTAATGCGGCAATCAAGCACATTA
ATCCGAATGGAGACAAAAAGCTGCATGTAAGCTTTGACATTGATGCACTTGATCCATTAT
TTGCAAATGCTACAGGTACTCCTGTCGGCGGTGGTTTGACTCTTCGTGAGGGAATTTTTC
TAATGGAAGAAGTCTATAAAAGTGGAACTCTTAGATCAATGGACTTGGTTGAAGTAAATC
CACAACTTGGTGACGCTCGTGATGTTACAAACACAATTAACTCAGCAAAGGCAATTTTGT
ATGCCGCACTGGGCAACAATCGGAGCGGAAACACTTCGTGA

>g9339.t6 Gene=g9339 Length=173
MHGMPASLIVKELRSNWPFVPELEWCKAELSLKNFCWIGLRSIDYYERLSMEKYGIKYFD
MRDIDKMGIDKVTNAAIKHINPNGDKKLHVSFDIDALDPLFANATGTPVGGGLTLREGIF
LMEEVYKSGTLRSMDLVEVNPQLGDARDVTNTINSAKAILYAALGNNRSGNTS

Protein features from InterProScan

Transcript Database ID Name Start End E.value
7 g9339.t6 Gene3D G3DSA:3.40.800.10 - 1 173 0.00
2 g9339.t6 PANTHER PTHR43782 ARGINASE 1 171 0.00
5 g9339.t6 PRINTS PR00116 Arginase signature 38 56 0.00
3 g9339.t6 PRINTS PR00116 Arginase signature 88 117 0.00
4 g9339.t6 PRINTS PR00116 Arginase signature 123 137 0.00
1 g9339.t6 Pfam PF00491 Arginase family 2 162 0.00
8 g9339.t6 ProSiteProfiles PS51409 Arginase family profile. 1 171 27.88
6 g9339.t6 SUPERFAMILY SSF52768 Arginase/deacetylase 1 165 0.00

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0046872 metal ion binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed