Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Arginase-1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g9339 g9339.t7 TSS g9339.t7 1917570 1917570
chr_1 g9339 g9339.t7 isoform g9339.t7 1918357 1918910
chr_1 g9339 g9339.t7 exon g9339.t7.exon1 1918357 1918796
chr_1 g9339 g9339.t7 cds g9339.t7.CDS1 1918389 1918796
chr_1 g9339 g9339.t7 exon g9339.t7.exon2 1918855 1918910
chr_1 g9339 g9339.t7 cds g9339.t7.CDS2 1918855 1918908
chr_1 g9339 g9339.t7 TTS g9339.t7 1919041 1919041

Sequences

>g9339.t7 Gene=g9339 Length=496
TAAAAATAACTTTCATCTCTATTTTAGGTAACATGCATGGCATGCCAGCAAGTTTAATAG
TCAAAGAATTGCGCTCAAATTGGCCTTTTGTGCCAGAACTCGAATGGTGCAAGGCAGAAT
TGTCATTGAAAAATTTTTGCTGGATTGGACTACGTTCGATTGATTACTATGAACGATTGA
GCATGGAAAAGTATGGAATTAAGTACTTTGACATGCGCGACATCGATAAGATGGGAATTG
ACAAGGTAACTAATGCGGCAATCAAGCACATTAATCCGAATGGAGACAAAAAGCTGCATG
TAAGCTTTGACATTGATGCACTTGATCCATTATTTGCAAATGCTACAGGTACTCCTGTCG
GCGGTGGTTTGACTCTTCGTGAGGGAATTTTTCTAATGGAAGAAGTCTATAAAAGTGGAA
CTCTTAGATCAATGGACTTGCAAAGGCAATTTTGTATGCCGCACTGGGCAACAATCGGAG
CGGAAACACTTCGTGA

>g9339.t7 Gene=g9339 Length=154
MHGMPASLIVKELRSNWPFVPELEWCKAELSLKNFCWIGLRSIDYYERLSMEKYGIKYFD
MRDIDKMGIDKVTNAAIKHINPNGDKKLHVSFDIDALDPLFANATGTPVGGGLTLREGIF
LMEEVYKSGTLRSMDLQRQFCMPHWATIGAETLR

Protein features from InterProScan

Transcript Database ID Name Start End E.value
7 g9339.t7 Gene3D G3DSA:3.40.800.10 - 1 138 0.000
2 g9339.t7 PANTHER PTHR43782 ARGINASE 1 136 0.000
5 g9339.t7 PRINTS PR00116 Arginase signature 38 56 0.000
3 g9339.t7 PRINTS PR00116 Arginase signature 88 117 0.000
4 g9339.t7 PRINTS PR00116 Arginase signature 123 137 0.000
1 g9339.t7 Pfam PF00491 Arginase family 2 136 0.000
8 g9339.t7 ProSiteProfiles PS51409 Arginase family profile. 1 154 23.744
6 g9339.t7 SUPERFAMILY SSF52768 Arginase/deacetylase 1 136 0.000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0046872 metal ion binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed