Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Trypsin-7.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g9352 g9352.t2 TSS g9352.t2 2179734 2179734
chr_1 g9352 g9352.t2 isoform g9352.t2 2179758 2180864
chr_1 g9352 g9352.t2 exon g9352.t2.exon1 2179758 2179911
chr_1 g9352 g9352.t2 cds g9352.t2.CDS1 2179758 2179911
chr_1 g9352 g9352.t2 exon g9352.t2.exon2 2179984 2180025
chr_1 g9352 g9352.t2 cds g9352.t2.CDS2 2179984 2180025
chr_1 g9352 g9352.t2 exon g9352.t2.exon3 2180094 2180340
chr_1 g9352 g9352.t2 cds g9352.t2.CDS3 2180094 2180340
chr_1 g9352 g9352.t2 exon g9352.t2.exon4 2180708 2180864
chr_1 g9352 g9352.t2 cds g9352.t2.CDS4 2180708 2180864
chr_1 g9352 g9352.t2 TTS g9352.t2 2181156 2181156

Sequences

>g9352.t2 Gene=g9352 Length=600
ATGAAAATATTCTTAATTTTTGTGAGCTTAATTGCTTCCATTATTGCGGCAAATGTCCGT
AGTGGTGGTAAAATAGTTGGTGGAATTGAAGTGCCAATTGAAAATGTGCCATATCAAGTT
TCTGTCCGGTATAACAACTACCATACTTGTGGAGGCTCGATTATATCTTCATCCTTCATA
TTGACAGCACAACATTGCACTTCAGGAAGAACTGCTGGATATTTAACAGTTCGTGCTGGT
TCTAACAGTAGCATCAATGGTGGTGAAATTTTCCAAGTATCAAAAATCATTCCACATCCA
AATTTCAATGAATATTCACTCGATTATGACTTTTCATTGCTTAAATTGACCAATGCTATT
GTACTTGATGGAATTACAAAAGACAAAGTTCAATTGCCAACACAAGATGAAATTTTAGCT
AAAGGAATCGCAATGTTTGTGAGCGGCTGGGGAGCAACACTTAATCCAAACCAATCAACC
AGTATTTTACGAGGTGTCACAATCACCAGCATCGACTTTGACACGTGCAATTTAATATAC
TTGAGAGATGGTGGCTTGGGTGCATCACAGATATGTGCGGGTGAATTGGCCGGCGGAAAG

>g9352.t2 Gene=g9352 Length=200
MKIFLIFVSLIASIIAANVRSGGKIVGGIEVPIENVPYQVSVRYNNYHTCGGSIISSSFI
LTAQHCTSGRTAGYLTVRAGSNSSINGGEIFQVSKIIPHPNFNEYSLDYDFSLLKLTNAI
VLDGITKDKVQLPTQDEILAKGIAMFVSGWGATLNPNQSTSILRGVTITSIDFDTCNLIY
LRDGGLGASQICAGELAGGK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
15 g9352.t2 CDD cd00190 Tryp_SPc 25 200 2.70921E-53
8 g9352.t2 Gene3D G3DSA:2.40.10.10 - 25 199 4.2E-39
9 g9352.t2 Gene3D G3DSA:2.40.10.10 - 37 129 4.2E-39
2 g9352.t2 PANTHER PTHR24276 POLYSERASE-RELATED 17 200 1.2E-48
3 g9352.t2 PANTHER PTHR24276:SF83 GH13245P2-RELATED 17 200 1.2E-48
4 g9352.t2 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 51 66 9.1E-6
5 g9352.t2 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 106 120 9.1E-6
1 g9352.t2 Pfam PF00089 Trypsin 25 199 2.8E-30
11 g9352.t2 Phobius SIGNAL_PEPTIDE Signal peptide region 1 16 -
12 g9352.t2 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide. 1 2 -
13 g9352.t2 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide. 3 11 -
14 g9352.t2 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide. 12 16 -
10 g9352.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 17 200 -
18 g9352.t2 ProSiteProfiles PS50240 Serine proteases, trypsin domain profile. 25 200 19.092
17 g9352.t2 SMART SM00020 trypsin_2 24 199 4.1E-22
6 g9352.t2 SUPERFAMILY SSF50494 Trypsin-like serine proteases 18 199 1.34E-46
7 g9352.t2 SignalP_EUK SignalP-noTM SignalP-noTM 1 16 -
16 g9352.t2 SignalP_GRAM_NEGATIVE SignalP-noTM SignalP-noTM 1 17 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0004252 serine-type endopeptidase activity MF
GO:0006508 proteolysis BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed