General information for g9358.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Very long-chain-fatty-acid–CoA ligase bubblegum.
Parent gene
- The parent gene g9358 is located on chr_1: 2217613..2219717 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9358 | g9358.t1 | TSS | g9358.t1 | 2217559 | 2217559 |
| chr_1 | g9358 | g9358.t1 | isoform | g9358.t1 | 2217613 | 2219717 |
| chr_1 | g9358 | g9358.t1 | exon | g9358.t1.exon1 | 2217613 | 2217802 |
| chr_1 | g9358 | g9358.t1 | cds | g9358.t1.CDS1 | 2217613 | 2217802 |
| chr_1 | g9358 | g9358.t1 | exon | g9358.t1.exon2 | 2217889 | 2217964 |
| chr_1 | g9358 | g9358.t1 | cds | g9358.t1.CDS2 | 2217889 | 2217964 |
| chr_1 | g9358 | g9358.t1 | exon | g9358.t1.exon3 | 2218017 | 2218336 |
| chr_1 | g9358 | g9358.t1 | cds | g9358.t1.CDS3 | 2218017 | 2218336 |
| chr_1 | g9358 | g9358.t1 | exon | g9358.t1.exon4 | 2218393 | 2219717 |
| chr_1 | g9358 | g9358.t1 | cds | g9358.t1.CDS4 | 2218393 | 2219717 |
| chr_1 | g9358 | g9358.t1 | TTS | g9358.t1 | 2219741 | 2219741 |
Sequences
>g9358.t1 Gene=g9358 Length=1911
ATGAAAGAAATTCAAAGTGAAAAATTAAAATCGACTGAAAATCGTTTTGCTGTTTTACCA
AGTGATCATGTCAAAATTTTCACTAGTGAAAATGAAATTTCACCTCGTGATGTTCAAACA
ATTCCTGAAGTATTCGATCAAATTTGTGAGAAATTCAGCAACCACAATGCTTTGATGTTC
AAAGTCAAAGAATTCGGAACTGTTGCAGTTTTAGCTTCAAATAGTGTCGAATGGTTTTTA
TCTTATTTGGCTGCAATTCATGCTGGTGGAATAATAACTGGAATTTATACACAAAATTCA
CCTGATGCTTGTCATCATATTCTTGAAAGTTCAAAGGCTAACATTGTTGTTGTTGATAAT
GATGAACAATTGCAGAAAATTCTTAAAATCAAAGACAAATTGCCAAATTTAAAAGCAATT
GTTCAAACTTTTCCATCGAAAATTTCAACTGATGAGAAAATTTATAAATGGCAGGAACTT
GAAATGATGGAAATTGATGATGAAATTGTAGAAATTTATCAAGAAAGACTTTCGAAAATC
AAGGCTAATGCATGTTGTAACTTTATTTATACTTCAGGAACAACTGGAAATCCTAAAGGA
GTCATGTTAAGTCATGACAATCTGATTTGGACTGCTCATAACTTTTTTGATTTCTGTGGT
AATTTTAAATATGCCAAAGAAGTTATAGTTTCTTATCTACCGCTTTCACATATTGTCGCT
GTTTTTATTGATATTTCAATTGCAATTTCACTTGCTGCTACAGTTTATTTTGCTGATGAA
AATGCATTAAAAGGAACTTTATTTAAAACACTGAATGAAGTCAGGCCAACATTTTTCTTT
AGTGTTCCAAGAGTTTATGAGAAAATTTATGAAAATTTGTCTAAAAGATTCAATGAAAGT
AGTGGAATTCAAAGTACTTTATTGTCATGGGCAAGGAATGCAGCATTAAATCATCATTTG
AATGAAGTTGAAGGACACTTAGGAAAATACATTCAGTATTTGCTTGCTAAACCATTTTTG
AATAAAATCAAAGCAGCTTTAGGTCTTGATCGTGTTGAAACTTTAATGATTGGTTCTGCT
CCTGCTAATAAAGAAATTTTTGAATTTTTTCTTAGCTTGGATTTAAAATTAATCGATGCT
TATGGTTCTTCAGAAAGTACAGCATTGATAACATGCAATCCTCCAAATGGAGTGAAATTT
GGAAGCACAGGAAAAGCACTTTTTAATACAGATTTAAAAATAAAAGATCCAAATGAGAAT
GGAGTTGGTGAAATTTGTTGTCGTGGTAGAATGACATTTATGGGATATTTGAATGATATT
GAGAAGACAATGGAAGTTATTGATAAAGATTTTTGGTTTAATACTGGCGATGTTGGATAT
TTTGATGATGAAGGATTTTTATTTATAACTGGAAGAACTAAAGAGCTGATAGTATCATCC
GGTGGTGAAAATATTCCTTATCCTTTGATTGAAAATACTGTGAAAAATGAATGTGAAGCA
ATTTCAAATGCTTTCTTAGTTGGTGACAAAAAAAAATTTCTGACAATGTTGATAACTTTG
AAAACTAAAATGGACCAAAATGGTACACCAACTGATGAACTTGCTGATGAAAGTTTGACT
TTAATGAAAGATTTAGGTTTGAATTATGTTTCATTGAGTGAAATTCTCAATGCTGGACCT
GATAAGAAAGTTTTAACTGCAATTCAATCAGCAATCGATCGTGCAAATGAAAAAGCAATT
TCAAGAGCTCAGAAAATTCAGAAATTTGCAATTTTACCAAATGATTTTAGTTTATCAACT
GGAGAATTGAGTTCAACATTGAAGCTGAAAAGACATTTTGTGCTTAAGAAATATAAGAAA
ATTATTGATGAACTTTATTCAAGAATAAGGTTGAATAGTTTAAAAAAATAA
>g9358.t1 Gene=g9358 Length=636
MKEIQSEKLKSTENRFAVLPSDHVKIFTSENEISPRDVQTIPEVFDQICEKFSNHNALMF
KVKEFGTVAVLASNSVEWFLSYLAAIHAGGIITGIYTQNSPDACHHILESSKANIVVVDN
DEQLQKILKIKDKLPNLKAIVQTFPSKISTDEKIYKWQELEMMEIDDEIVEIYQERLSKI
KANACCNFIYTSGTTGNPKGVMLSHDNLIWTAHNFFDFCGNFKYAKEVIVSYLPLSHIVA
VFIDISIAISLAATVYFADENALKGTLFKTLNEVRPTFFFSVPRVYEKIYENLSKRFNES
SGIQSTLLSWARNAALNHHLNEVEGHLGKYIQYLLAKPFLNKIKAALGLDRVETLMIGSA
PANKEIFEFFLSLDLKLIDAYGSSESTALITCNPPNGVKFGSTGKALFNTDLKIKDPNEN
GVGEICCRGRMTFMGYLNDIEKTMEVIDKDFWFNTGDVGYFDDEGFLFITGRTKELIVSS
GGENIPYPLIENTVKNECEAISNAFLVGDKKKFLTMLITLKTKMDQNGTPTDELADESLT
LMKDLGLNYVSLSEILNAGPDKKVLTAIQSAIDRANEKAISRAQKIQKFAILPNDFSLST
GELSSTLKLKRHFVLKKYKKIIDELYSRIRLNSLKK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g9358.t1 | Gene3D | G3DSA:3.40.50.12780 | - | 24 | 315 | 1.3E-43 |
| 5 | g9358.t1 | Gene3D | G3DSA:3.40.50.12780 | - | 327 | 472 | 4.4E-35 |
| 2 | g9358.t1 | PANTHER | PTHR43272 | LONG-CHAIN-FATTY-ACID–COA LIGASE | 61 | 628 | 1.4E-208 |
| 3 | g9358.t1 | PANTHER | PTHR43272:SF32 | LONG-CHAIN-FATTY-ACID–COA LIGASE ACSBG2 | 61 | 628 | 1.4E-208 |
| 1 | g9358.t1 | Pfam | PF00501 | AMP-binding enzyme | 61 | 479 | 5.3E-86 |
| 7 | g9358.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 231 | - |
| 9 | g9358.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 232 | 258 | - |
| 8 | g9358.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 259 | 636 | - |
| 4 | g9358.t1 | SUPERFAMILY | SSF56801 | Acetyl-CoA synthetase-like | 34 | 629 | 4.45E-94 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed