General information for g9358.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Very long-chain-fatty-acid–CoA ligase bubblegum.
Parent gene
- The parent gene g9358 is located on chr_1: 2217613..2219717 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9358 | g9358.t3 | TSS | g9358.t3 | 2217559 | 2217559 |
| chr_1 | g9358 | g9358.t3 | isoform | g9358.t3 | 2217613 | 2219717 |
| chr_1 | g9358 | g9358.t3 | exon | g9358.t3.exon1 | 2217613 | 2217964 |
| chr_1 | g9358 | g9358.t3 | exon | g9358.t3.exon2 | 2218017 | 2218336 |
| chr_1 | g9358 | g9358.t3 | cds | g9358.t3.CDS1 | 2218234 | 2218336 |
| chr_1 | g9358 | g9358.t3 | exon | g9358.t3.exon3 | 2218393 | 2219717 |
| chr_1 | g9358 | g9358.t3 | cds | g9358.t3.CDS2 | 2218393 | 2219717 |
| chr_1 | g9358 | g9358.t3 | TTS | g9358.t3 | 2219741 | 2219741 |
Sequences
>g9358.t3 Gene=g9358 Length=1997
ATGAAAGAAATTCAAAGTGAAAAATTAAAATCGACTGAAAATCGTTTTGCTGTTTTACCA
AGTGATCATGTCAAAATTTTCACTAGTGAAAATGAAATTTCACCTCGTGATGTTCAAACA
ATTCCTGAAGTATTCGATCAAATTTGTGAGAAATTCAGCAACCACAATGCTTTGATGTTC
AAAGTCAAAGGTGAAAATGATTGGAAATCACTTATGGAGAATACAAAAATCGAGTTGAAA
AAATTGCAAAATCTTTCATTAAAATTGGACTTGAAGAATTCGGAACTGTTGCAGTTTTAG
CTTCAAATAGTGTCGAATGGTTTTTATCTTATTTGGCTGCAATTCATGCTGGTGGAATAA
TAACTGGAATTTATACACAAAATTCACCTGATGCTTGTCATCATATTCTTGAAAGTTCAA
AGGCTAACATTGTTGTTGTTGATAATGATGAACAATTGCAGAAAATTCTTAAAATCAAAG
ACAAATTGCCAAATTTAAAAGCAATTGTTCAAACTTTTCCATCGAAAATTTCAACTGATG
AGAAAATTTATAAATGGCAGGAACTTGAAATGATGGAAATTGATGATGAAATTGTAGAAA
TTTATCAAGAAAGACTTTCGAAAATCAAGGCTAATGCATGTTGTAACTTTATTTATACTT
CAGGAACAACTGGAAATCCTAAAGGAGTCATGTTAAGTCATGACAATCTGATTTGGACTG
CTCATAACTTTTTTGATTTCTGTGGTAATTTTAAATATGCCAAAGAAGTTATAGTTTCTT
ATCTACCGCTTTCACATATTGTCGCTGTTTTTATTGATATTTCAATTGCAATTTCACTTG
CTGCTACAGTTTATTTTGCTGATGAAAATGCATTAAAAGGAACTTTATTTAAAACACTGA
ATGAAGTCAGGCCAACATTTTTCTTTAGTGTTCCAAGAGTTTATGAGAAAATTTATGAAA
ATTTGTCTAAAAGATTCAATGAAAGTAGTGGAATTCAAAGTACTTTATTGTCATGGGCAA
GGAATGCAGCATTAAATCATCATTTGAATGAAGTTGAAGGACACTTAGGAAAATACATTC
AGTATTTGCTTGCTAAACCATTTTTGAATAAAATCAAAGCAGCTTTAGGTCTTGATCGTG
TTGAAACTTTAATGATTGGTTCTGCTCCTGCTAATAAAGAAATTTTTGAATTTTTTCTTA
GCTTGGATTTAAAATTAATCGATGCTTATGGTTCTTCAGAAAGTACAGCATTGATAACAT
GCAATCCTCCAAATGGAGTGAAATTTGGAAGCACAGGAAAAGCACTTTTTAATACAGATT
TAAAAATAAAAGATCCAAATGAGAATGGAGTTGGTGAAATTTGTTGTCGTGGTAGAATGA
CATTTATGGGATATTTGAATGATATTGAGAAGACAATGGAAGTTATTGATAAAGATTTTT
GGTTTAATACTGGCGATGTTGGATATTTTGATGATGAAGGATTTTTATTTATAACTGGAA
GAACTAAAGAGCTGATAGTATCATCCGGTGGTGAAAATATTCCTTATCCTTTGATTGAAA
ATACTGTGAAAAATGAATGTGAAGCAATTTCAAATGCTTTCTTAGTTGGTGACAAAAAAA
AATTTCTGACAATGTTGATAACTTTGAAAACTAAAATGGACCAAAATGGTACACCAACTG
ATGAACTTGCTGATGAAAGTTTGACTTTAATGAAAGATTTAGGTTTGAATTATGTTTCAT
TGAGTGAAATTCTCAATGCTGGACCTGATAAGAAAGTTTTAACTGCAATTCAATCAGCAA
TCGATCGTGCAAATGAAAAAGCAATTTCAAGAGCTCAGAAAATTCAGAAATTTGCAATTT
TACCAAATGATTTTAGTTTATCAACTGGAGAATTGAGTTCAACATTGAAGCTGAAAAGAC
ATTTTGTGCTTAAGAAATATAAGAAAATTATTGATGAACTTTATTCAAGAATAAGGTTGA
ATAGTTTAAAAAAATAA
>g9358.t3 Gene=g9358 Length=475
MMEIDDEIVEIYQERLSKIKANACCNFIYTSGTTGNPKGVMLSHDNLIWTAHNFFDFCGN
FKYAKEVIVSYLPLSHIVAVFIDISIAISLAATVYFADENALKGTLFKTLNEVRPTFFFS
VPRVYEKIYENLSKRFNESSGIQSTLLSWARNAALNHHLNEVEGHLGKYIQYLLAKPFLN
KIKAALGLDRVETLMIGSAPANKEIFEFFLSLDLKLIDAYGSSESTALITCNPPNGVKFG
STGKALFNTDLKIKDPNENGVGEICCRGRMTFMGYLNDIEKTMEVIDKDFWFNTGDVGYF
DDEGFLFITGRTKELIVSSGGENIPYPLIENTVKNECEAISNAFLVGDKKKFLTMLITLK
TKMDQNGTPTDELADESLTLMKDLGLNYVSLSEILNAGPDKKVLTAIQSAIDRANEKAIS
RAQKIQKFAILPNDFSLSTGELSSTLKLKRHFVLKKYKKIIDELYSRIRLNSLKK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g9358.t3 | Gene3D | G3DSA:3.40.50.12780 | - | 3 | 169 | 1.1E-25 |
| 5 | g9358.t3 | Gene3D | G3DSA:3.40.50.12780 | - | 170 | 311 | 2.6E-35 |
| 2 | g9358.t3 | PANTHER | PTHR43272 | LONG-CHAIN-FATTY-ACID–COA LIGASE | 8 | 467 | 3.4E-165 |
| 3 | g9358.t3 | PANTHER | PTHR43272:SF32 | LONG-CHAIN-FATTY-ACID–COA LIGASE ACSBG2 | 8 | 467 | 3.4E-165 |
| 1 | g9358.t3 | Pfam | PF00501 | AMP-binding enzyme | 15 | 318 | 2.4E-67 |
| 7 | g9358.t3 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 70 | - |
| 9 | g9358.t3 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 71 | 97 | - |
| 8 | g9358.t3 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 98 | 475 | - |
| 4 | g9358.t3 | SUPERFAMILY | SSF56801 | Acetyl-CoA synthetase-like | 18 | 468 | 2.22E-75 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed