General information for g9361.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Probable cytochrome P450 4d14.
Parent gene
- The parent gene g9361 is located on chr_1: 2256135..2256811 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9361 | g9361.t3 | TTS | g9361.t3 | 2254813 | 2254813 |
| chr_1 | g9361 | g9361.t3 | isoform | g9361.t3 | 2254989 | 2256811 |
| chr_1 | g9361 | g9361.t3 | exon | g9361.t3.exon1 | 2254989 | 2255161 |
| chr_1 | g9361 | g9361.t3 | cds | g9361.t3.CDS1 | 2254989 | 2255161 |
| chr_1 | g9361 | g9361.t3 | exon | g9361.t3.exon2 | 2255222 | 2255414 |
| chr_1 | g9361 | g9361.t3 | cds | g9361.t3.CDS2 | 2255222 | 2255414 |
| chr_1 | g9361 | g9361.t3 | exon | g9361.t3.exon3 | 2255473 | 2255979 |
| chr_1 | g9361 | g9361.t3 | cds | g9361.t3.CDS3 | 2255473 | 2255970 |
| chr_1 | g9361 | g9361.t3 | exon | g9361.t3.exon4 | 2256125 | 2256811 |
| chr_1 | g9361 | g9361.t3 | TSS | g9361.t3 | 2256887 | 2256887 |
Sequences
>g9361.t3 Gene=g9361 Length=1560
ATGATAATTATATGGTTTACTATTTCGGTCATTGTTTTACTTTATCTATGGGACAAAAAT
GGTTTTAAAAATCCAAGATTTATTAAATGTTCTGAAAAGTTCAACGGTCCTAAAACTATT
CCTATTTTTGGAAATGCATTGCAATATTTAGCAAAATCAACTGAAGGTCAATTAAACACT
CAAATCAAATCTTATCTTTTAATTTGATAAGAAAAAAACTCTTTATTTTGCTTTAGATGC
GCTTCCATTAGCTGCAAAATTTTTCAATATTTATGGTGATACTGTGAGAATTTGGGCATT
TAAAAGATTTGTTCTTTTAACTAAAGATCCAAAATTTTTCGAAGTTATTCTATCAAGTCA
AAAGCAATTAACTAAAAATAATCTTTATGATTTGATGCACGACTGGCTTGGTGGTGGACT
TTTGCTTTCAACAAATGAAAAATGGTTTCAAAGAAGAAAAATTATAACTCCAACATTTCA
TTTTAAAATATTGCAAGAATTTGTCGATGTTTTCAATTATCAGAATAATATTTTTGTTAA
AAAACTGAAAGAACTAAAGAGTGAAAATCCATTTGATATTTATAACATGGTTACATTAAT
GTCACTCGATATCATTAGTCAAACAGCAATGGGTGTTGAAATTCATGCACAAAATGATGA
TTCTGAATATGCACAAACTGTTAAAGAATCGATCGAATGATGCATATTTGGAAAAGACCA
AATTTTATTTATCAATTTACATCTGATAAAGTAAGATATGATAGGTGTTTAAAAACTTTG
CATAGTTTTACAAGAAAAATTATTGAAAAACGACGCGAAACGATAATAAATGAGGAAGAT
GAAGGTTTTGAAAATGTCGATGATGATTCAATAGGAATAAAGAAAAGAATGGCATTACTT
GATGTTCTATTAAAATCGACAGTTAATGGAAAACCTTTGACAAATTCTGAGATTGCTGAA
GAGGTTGATACTTTTATGTTTGAGGGGCATGATACTGTTACAACCAGCACCACTTTCACT
CTTTATTTGCTTTCACAACATCCTGATGTTCAAAAAAAAGTCTATGAAGAAGCTATTAAA
ATTGTAGGATATGATTTAAGTGTTAATCCAACATATAATCAACTACAAGATATGAAATAT
CTTGAATGTGTCATTAAAGAATCATTAAGAATGTATCCACCAGTTCCTATCATTGGTCGA
AAATTAGATGAAGACATGATTTTTGGCCAAACATTGATTCCAGCTGGTGTAAATACAAAC
TTAATGATTTACCACTTGAACATGGATGAGAGATATTTTAAAAATCCTGAAAAATTCATT
CCTGAAAGATTTAGTGAAACAAATATTAGAAATGAAAATCCATTTTTATATGTACCATTT
TCCGCTGGTCCTCGAAACTGCATTGGCCAAAAATTCGCCATGTTGGAGCTTAAAAGTACA
CTTTCTAATGTGATTAGAAACTTTGAATTGATTAAGAGTGACATTCCATTAAATATCATT
GCACAACTTACATTAAAATCTACTACTGGTGTTCATGTTGGTTTTAGACAAAGAAAATAA
>g9361.t3 Gene=g9361 Length=287
MMHIWKRPNFIYQFTSDKVRYDRCLKTLHSFTRKIIEKRRETIINEEDEGFENVDDDSIG
IKKRMALLDVLLKSTVNGKPLTNSEIAEEVDTFMFEGHDTVTTSTTFTLYLLSQHPDVQK
KVYEEAIKIVGYDLSVNPTYNQLQDMKYLECVIKESLRMYPPVPIIGRKLDEDMIFGQTL
IPAGVNTNLMIYHLNMDERYFKNPEKFIPERFSETNIRNENPFLYVPFSAGPRNCIGQKF
AMLELKSTLSNVIRNFELIKSDIPLNIIAQLTLKSTTGVHVGFRQRK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 16 | g9361.t3 | Gene3D | G3DSA:1.10.630.10 | Cytochrome p450 | 1 | 287 | 1.4E-82 |
| 2 | g9361.t3 | PANTHER | PTHR24291:SF143 | CYTOCHROME P450 4D1-RELATED | 2 | 286 | 5.3E-101 |
| 3 | g9361.t3 | PANTHER | PTHR24291 | CYTOCHROME P450 FAMILY 4 | 2 | 286 | 5.3E-101 |
| 5 | g9361.t3 | PRINTS | PR00463 | E-class P450 group I signature | 85 | 102 | 1.5E-24 |
| 12 | g9361.t3 | PRINTS | PR00385 | P450 superfamily signature | 96 | 113 | 2.4E-13 |
| 8 | g9361.t3 | PRINTS | PR00463 | E-class P450 group I signature | 105 | 131 | 1.5E-24 |
| 6 | g9361.t3 | PRINTS | PR00463 | E-class P450 group I signature | 150 | 168 | 1.5E-24 |
| 11 | g9361.t3 | PRINTS | PR00385 | P450 superfamily signature | 151 | 162 | 2.4E-13 |
| 9 | g9361.t3 | PRINTS | PR00463 | E-class P450 group I signature | 190 | 214 | 1.5E-24 |
| 4 | g9361.t3 | PRINTS | PR00463 | E-class P450 group I signature | 225 | 235 | 1.5E-24 |
| 13 | g9361.t3 | PRINTS | PR00385 | P450 superfamily signature | 226 | 235 | 2.4E-13 |
| 7 | g9361.t3 | PRINTS | PR00463 | E-class P450 group I signature | 235 | 258 | 1.5E-24 |
| 10 | g9361.t3 | PRINTS | PR00385 | P450 superfamily signature | 235 | 246 | 2.4E-13 |
| 1 | g9361.t3 | Pfam | PF00067 | Cytochrome P450 | 7 | 259 | 8.3E-76 |
| 15 | g9361.t3 | ProSitePatterns | PS00086 | Cytochrome P450 cysteine heme-iron ligand signature. | 228 | 237 | - |
| 14 | g9361.t3 | SUPERFAMILY | SSF48264 | Cytochrome P450 | 8 | 286 | 2.62E-78 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0020037 | heme binding | MF |
| GO:0016705 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | MF |
| GO:0005506 | iron ion binding | MF |
| GO:0055114 | NA | NA |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed