Gene loci information

Transcript annotation

  • This transcript has been annotated as Cytochrome P450 4d2.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g9361 g9361.t4 TTS g9361.t4 2254813 2254813
chr_1 g9361 g9361.t4 isoform g9361.t4 2254989 2256811
chr_1 g9361 g9361.t4 exon g9361.t4.exon1 2254989 2255161
chr_1 g9361 g9361.t4 cds g9361.t4.CDS1 2254989 2255161
chr_1 g9361 g9361.t4 exon g9361.t4.exon2 2255222 2255414
chr_1 g9361 g9361.t4 cds g9361.t4.CDS2 2255222 2255414
chr_1 g9361 g9361.t4 exon g9361.t4.exon3 2255473 2255995
chr_1 g9361 g9361.t4 cds g9361.t4.CDS3 2255473 2255995
chr_1 g9361 g9361.t4 exon g9361.t4.exon4 2256125 2256560
chr_1 g9361 g9361.t4 cds g9361.t4.CDS4 2256125 2256560
chr_1 g9361 g9361.t4 exon g9361.t4.exon5 2256646 2256811
chr_1 g9361 g9361.t4 cds g9361.t4.CDS5 2256646 2256811
chr_1 g9361 g9361.t4 TSS g9361.t4 2256887 2256887

Sequences

>g9361.t4 Gene=g9361 Length=1491
ATGATAATTATATGGTTTACTATTTCGGTCATTGTTTTACTTTATCTATGGGACAAAAAT
GGTTTTAAAAATCCAAGATTTATTAAATGTTCTGAAAAGTTCAACGGTCCTAAAACTATT
CCTATTTTTGGAAATGCATTGCAATATTTAGCAAAATCAACTGAAGCTGCAAAATTTTTC
AATATTTATGGTGATACTGTGAGAATTTGGGCATTTAAAAGATTTGTTCTTTTAACTAAA
GATCCAAAATTTTTCGAAGTTATTCTATCAAGTCAAAAGCAATTAACTAAAAATAATCTT
TATGATTTGATGCACGACTGGCTTGGTGGTGGACTTTTGCTTTCAACAAATGAAAAATGG
TTTCAAAGAAGAAAAATTATAACTCCAACATTTCATTTTAAAATATTGCAAGAATTTGTC
GATGTTTTCAATTATCAGAATAATATTTTTGTTAAAAAACTGAAAGAACTAAAGAGTGAA
AATCCATTTGATATTTATAACATGGTTACATTAATGTCACTCGATATCATTAGTCAAACA
GCAATGGGTGTTGAAATTCATGCACAAAATGATGATTCTGAATATGCACAAACTGTTAAA
GAAATGACATACATAATTATCGATCGAATGATGCATATTTGGAAAAGACCAAATTTTATT
TATCAATTTACATCTGATAAAGTAAGATATGATAGGTGTTTAAAAACTTTGCATAGTTTT
ACAAGAAAAATTATTGAAAAACGACGCGAAACGATAATAAATGAGGAAGATGAAGGTTTT
GAAAATGTCGATGATGATTCAATAGGAATAAAGAAAAGAATGGCATTACTTGATGTTCTA
TTAAAATCGACAGTTAATGGAAAACCTTTGACAAATTCTGAGATTGCTGAAGAGGTTGAT
ACTTTTATGTTTGAGGGGCATGATACTGTTACAACCAGCACCACTTTCACTCTTTATTTG
CTTTCACAACATCCTGATGTTCAAAAAAAAGTCTATGAAGAAGCTATTAAAATTGTAGGA
TATGATTTAAGTGTTAATCCAACATATAATCAACTACAAGATATGAAATATCTTGAATGT
GTCATTAAAGAATCATTAAGAATGTATCCACCAGTTCCTATCATTGGTCGAAAATTAGAT
GAAGACATGATTTTTGGCCAAACATTGATTCCAGCTGGTGTAAATACAAACTTAATGATT
TACCACTTGAACATGGATGAGAGATATTTTAAAAATCCTGAAAAATTCATTCCTGAAAGA
TTTAGTGAAACAAATATTAGAAATGAAAATCCATTTTTATATGTACCATTTTCCGCTGGT
CCTCGAAACTGCATTGGCCAAAAATTCGCCATGTTGGAGCTTAAAAGTACACTTTCTAAT
GTGATTAGAAACTTTGAATTGATTAAGAGTGACATTCCATTAAATATCATTGCACAACTT
ACATTAAAATCTACTACTGGTGTTCATGTTGGTTTTAGACAAAGAAAATAA

>g9361.t4 Gene=g9361 Length=496
MIIIWFTISVIVLLYLWDKNGFKNPRFIKCSEKFNGPKTIPIFGNALQYLAKSTEAAKFF
NIYGDTVRIWAFKRFVLLTKDPKFFEVILSSQKQLTKNNLYDLMHDWLGGGLLLSTNEKW
FQRRKIITPTFHFKILQEFVDVFNYQNNIFVKKLKELKSENPFDIYNMVTLMSLDIISQT
AMGVEIHAQNDDSEYAQTVKEMTYIIIDRMMHIWKRPNFIYQFTSDKVRYDRCLKTLHSF
TRKIIEKRRETIINEEDEGFENVDDDSIGIKKRMALLDVLLKSTVNGKPLTNSEIAEEVD
TFMFEGHDTVTTSTTFTLYLLSQHPDVQKKVYEEAIKIVGYDLSVNPTYNQLQDMKYLEC
VIKESLRMYPPVPIIGRKLDEDMIFGQTLIPAGVNTNLMIYHLNMDERYFKNPEKFIPER
FSETNIRNENPFLYVPFSAGPRNCIGQKFAMLELKSTLSNVIRNFELIKSDIPLNIIAQL
TLKSTTGVHVGFRQRK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
16 g9361.t4 Gene3D G3DSA:1.10.630.10 Cytochrome p450 22 496 1.4E-120
2 g9361.t4 PANTHER PTHR24291:SF143 CYTOCHROME P450 4D1-RELATED 9 495 3.7E-157
3 g9361.t4 PANTHER PTHR24291 CYTOCHROME P450 FAMILY 4 9 495 3.7E-157
4 g9361.t4 PRINTS PR00463 E-class P450 group I signature 294 311 2.3E-23
10 g9361.t4 PRINTS PR00385 P450 superfamily signature 305 322 1.5E-12
9 g9361.t4 PRINTS PR00463 E-class P450 group I signature 314 340 2.3E-23
8 g9361.t4 PRINTS PR00463 E-class P450 group I signature 359 377 2.3E-23
12 g9361.t4 PRINTS PR00385 P450 superfamily signature 360 371 1.5E-12
6 g9361.t4 PRINTS PR00463 E-class P450 group I signature 399 423 2.3E-23
7 g9361.t4 PRINTS PR00463 E-class P450 group I signature 434 444 2.3E-23
11 g9361.t4 PRINTS PR00385 P450 superfamily signature 435 444 1.5E-12
5 g9361.t4 PRINTS PR00463 E-class P450 group I signature 444 467 2.3E-23
13 g9361.t4 PRINTS PR00385 P450 superfamily signature 444 455 1.5E-12
1 g9361.t4 Pfam PF00067 Cytochrome P450 36 468 1.2E-106
18 g9361.t4 Phobius SIGNAL_PEPTIDE Signal peptide region 1 18 -
19 g9361.t4 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide. 1 2 -
20 g9361.t4 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide. 3 14 -
21 g9361.t4 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide. 15 18 -
17 g9361.t4 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 19 496 -
22 g9361.t4 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 437 446 -
14 g9361.t4 SUPERFAMILY SSF48264 Cytochrome P450 36 495 2.1E-112
15 g9361.t4 SignalP_EUK SignalP-noTM SignalP-noTM 1 21 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0020037 heme binding MF
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen MF
GO:0005506 iron ion binding MF
GO:0055114 NA NA

KEGG

Orthology

Pathway

This gene does not belong to any pathways.

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed