Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Cytochrome P450 4d8.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g9361 g9361.t5 TTS g9361.t5 2254813 2254813
chr_1 g9361 g9361.t5 isoform g9361.t5 2255393 2255979
chr_1 g9361 g9361.t5 exon g9361.t5.exon1 2255393 2255414
chr_1 g9361 g9361.t5 cds g9361.t5.CDS1 2255394 2255414
chr_1 g9361 g9361.t5 exon g9361.t5.exon2 2255473 2255979
chr_1 g9361 g9361.t5 cds g9361.t5.CDS2 2255473 2255970
chr_1 g9361 g9361.t5 TSS g9361.t5 2256887 2256887

Sequences

>g9361.t5 Gene=g9361 Length=529
ATCGATCGAATGATGCATATTTGGAAAAGACCAAATTTTATTTATCAATTTACATCTGAT
AAAGTAAGATATGATAGGTGTTTAAAAACTTTGCATAGTTTTACAAGAAAAATTATTGAA
AAACGACGCGAAACGATAATAAATGAGGAAGATGAAGGTTTTGAAAATGTCGATGATGAT
TCAATAGGAATAAAGAAAAGAATGGCATTACTTGATGTTCTATTAAAATCGACAGTTAAT
GGAAAACCTTTGACAAATTCTGAGATTGCTGAAGAGGTTGATACTTTTATGTTTGAGGGG
CATGATACTGTTACAACCAGCACCACTTTCACTCTTTATTTGCTTTCACAACATCCTGAT
GTTCAAAAAAAAGTCTATGAAGAAGCTATTAAAATTGTAGGATATGATTTAAGTGTTAAT
CCAACATATAATCAACTACAAGATATGAAATATCTTGAATGTGTCATTAAAGAATCATTA
AGAATGTATCCACCAGTTCCTATCATTGGTCGAAAATTAGATGAAGACA

>g9361.t5 Gene=g9361 Length=173
MMHIWKRPNFIYQFTSDKVRYDRCLKTLHSFTRKIIEKRRETIINEEDEGFENVDDDSIG
IKKRMALLDVLLKSTVNGKPLTNSEIAEEVDTFMFEGHDTVTTSTTFTLYLLSQHPDVQK
KVYEEAIKIVGYDLSVNPTYNQLQDMKYLECVIKESLRMYPPVPIIGRKLDED

Protein features from InterProScan

Transcript Database ID Name Start End E.value
8 g9361.t5 Gene3D G3DSA:1.10.630.10 Cytochrome p450 1 173 0.0e+00
2 g9361.t5 PANTHER PTHR24291:SF143 CYTOCHROME P450 4D1-RELATED 2 173 0.0e+00
3 g9361.t5 PANTHER PTHR24291 CYTOCHROME P450 FAMILY 4 2 173 0.0e+00
4 g9361.t5 PRINTS PR00463 E-class P450 group I signature 85 102 1.3e-06
6 g9361.t5 PRINTS PR00463 E-class P450 group I signature 105 131 1.3e-06
5 g9361.t5 PRINTS PR00463 E-class P450 group I signature 150 168 1.3e-06
1 g9361.t5 Pfam PF00067 Cytochrome P450 7 173 0.0e+00
7 g9361.t5 SUPERFAMILY SSF48264 Cytochrome P450 9 173 0.0e+00

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0020037 heme binding MF
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen MF
GO:0005506 iron ion binding MF
GO:0055114 NA NA

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed