Gene loci information

Transcript annotation

  • This transcript has been annotated as Cytochrome P450 4d2.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g9361 g9361.t6 TTS g9361.t6 2254813 2254813
chr_1 g9361 g9361.t6 isoform g9361.t6 2255393 2256811
chr_1 g9361 g9361.t6 exon g9361.t6.exon1 2255393 2255414
chr_1 g9361 g9361.t6 cds g9361.t6.CDS1 2255394 2255414
chr_1 g9361 g9361.t6 exon g9361.t6.exon2 2255473 2255995
chr_1 g9361 g9361.t6 cds g9361.t6.CDS2 2255473 2255995
chr_1 g9361 g9361.t6 exon g9361.t6.exon3 2256125 2256575
chr_1 g9361 g9361.t6 cds g9361.t6.CDS3 2256125 2256575
chr_1 g9361 g9361.t6 exon g9361.t6.exon4 2256646 2256811
chr_1 g9361 g9361.t6 cds g9361.t6.CDS4 2256646 2256811
chr_1 g9361 g9361.t6 TSS g9361.t6 2256887 2256887

Sequences

>g9361.t6 Gene=g9361 Length=1162
ATGATAATTATATGGTTTACTATTTCGGTCATTGTTTTACTTTATCTATGGGACAAAAAT
GGTTTTAAAAATCCAAGATTTATTAAATGTTCTGAAAAGTTCAACGGTCCTAAAACTATT
CCTATTTTTGGAAATGCATTGCAATATTTAGCAAAATCAACTGAAGATGCGCTTCCATTA
GCTGCAAAATTTTTCAATATTTATGGTGATACTGTGAGAATTTGGGCATTTAAAAGATTT
GTTCTTTTAACTAAAGATCCAAAATTTTTCGAAGTTATTCTATCAAGTCAAAAGCAATTA
ACTAAAAATAATCTTTATGATTTGATGCACGACTGGCTTGGTGGTGGACTTTTGCTTTCA
ACAAATGAAAAATGGTTTCAAAGAAGAAAAATTATAACTCCAACATTTCATTTTAAAATA
TTGCAAGAATTTGTCGATGTTTTCAATTATCAGAATAATATTTTTGTTAAAAAACTGAAA
GAACTAAAGAGTGAAAATCCATTTGATATTTATAACATGGTTACATTAATGTCACTCGAT
ATCATTAGTCAAACAGCAATGGGTGTTGAAATTCATGCACAAAATGATGATTCTGAATAT
GCACAAACTGTTAAAGAAATGACATACATAATTATCGATCGAATGATGCATATTTGGAAA
AGACCAAATTTTATTTATCAATTTACATCTGATAAAGTAAGATATGATAGGTGTTTAAAA
ACTTTGCATAGTTTTACAAGAAAAATTATTGAAAAACGACGCGAAACGATAATAAATGAG
GAAGATGAAGGTTTTGAAAATGTCGATGATGATTCAATAGGAATAAAGAAAAGAATGGCA
TTACTTGATGTTCTATTAAAATCGACAGTTAATGGAAAACCTTTGACAAATTCTGAGATT
GCTGAAGAGGTTGATACTTTTATGTTTGAGGGGCATGATACTGTTACAACCAGCACCACT
TTCACTCTTTATTTGCTTTCACAACATCCTGATGTTCAAAAAAAAGTCTATGAAGAAGCT
ATTAAAATTGTAGGATATGATTTAAGTGTTAATCCAACATATAATCAACTACAAGATATG
AAATATCTTGAATGTGTCATTAAAGAATCATTAAGAATGTATCCACCAGTTCCTATCATT
GGTCGAAAATTAGATGAAGACA

>g9361.t6 Gene=g9361 Length=387
MIIIWFTISVIVLLYLWDKNGFKNPRFIKCSEKFNGPKTIPIFGNALQYLAKSTEDALPL
AAKFFNIYGDTVRIWAFKRFVLLTKDPKFFEVILSSQKQLTKNNLYDLMHDWLGGGLLLS
TNEKWFQRRKIITPTFHFKILQEFVDVFNYQNNIFVKKLKELKSENPFDIYNMVTLMSLD
IISQTAMGVEIHAQNDDSEYAQTVKEMTYIIIDRMMHIWKRPNFIYQFTSDKVRYDRCLK
TLHSFTRKIIEKRRETIINEEDEGFENVDDDSIGIKKRMALLDVLLKSTVNGKPLTNSEI
AEEVDTFMFEGHDTVTTSTTFTLYLLSQHPDVQKKVYEEAIKIVGYDLSVNPTYNQLQDM
KYLECVIKESLRMYPPVPIIGRKLDED

Protein features from InterProScan

Transcript Database ID Name Start End E.value
9 g9361.t6 Gene3D G3DSA:1.10.630.10 Cytochrome p450 30 387 1.3E-81
2 g9361.t6 PANTHER PTHR24291:SF143 CYTOCHROME P450 4D1-RELATED 9 387 1.7E-115
3 g9361.t6 PANTHER PTHR24291 CYTOCHROME P450 FAMILY 4 9 387 1.7E-115
6 g9361.t6 PRINTS PR00463 E-class P450 group I signature 299 316 8.6E-6
5 g9361.t6 PRINTS PR00463 E-class P450 group I signature 319 345 8.6E-6
4 g9361.t6 PRINTS PR00463 E-class P450 group I signature 364 382 8.6E-6
1 g9361.t6 Pfam PF00067 Cytochrome P450 36 387 5.9E-70
11 g9361.t6 Phobius SIGNAL_PEPTIDE Signal peptide region 1 18 -
12 g9361.t6 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide. 1 2 -
13 g9361.t6 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide. 3 14 -
14 g9361.t6 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide. 15 18 -
10 g9361.t6 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 19 387 -
7 g9361.t6 SUPERFAMILY SSF48264 Cytochrome P450 34 387 1.06E-75
8 g9361.t6 SignalP_EUK SignalP-noTM SignalP-noTM 1 21 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0020037 heme binding MF
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen MF
GO:0005506 iron ion binding MF
GO:0055114 NA NA

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed