General information for g9361.t8
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Cytochrome P450 4d8.
Parent gene
- The parent gene g9361 is located on chr_1: 2256135..2256811 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9361 | g9361.t8 | isoform | g9361.t8 | 2255979 | 2256811 |
| chr_1 | g9361 | g9361.t8 | exon | g9361.t8.exon1 | 2255979 | 2255995 |
| chr_1 | g9361 | g9361.t8 | cds | g9361.t8.CDS1 | 2255980 | 2255995 |
| chr_1 | g9361 | g9361.t8 | exon | g9361.t8.exon2 | 2256125 | 2256811 |
| chr_1 | g9361 | g9361.t8 | cds | g9361.t8.CDS2 | 2256125 | 2256417 |
| chr_1 | g9361 | g9361.t8 | TSS | g9361.t8 | 2256887 | 2256887 |
| chr_1 | g9361 | g9361.t8 | TTS | g9361.t8 | NA | NA |
Sequences
>g9361.t8 Gene=g9361 Length=704
ATGATAATTATATGGTTTACTATTTCGGTCATTGTTTTACTTTATCTATGGGACAAAAAT
GGTTTTAAAAATCCAAGATTTATTAAATGTTCTGAAAAGTTCAACGGTCCTAAAACTATT
CCTATTTTTGGAAATGCATTGCAATATTTAGCAAAATCAACTGAAGGTCAATTAAACACT
CAAATCAAATCTTATCTTTTAATTTGATAAGAAAAAAACTCTTTATTTTGCTTTAGATGC
GCTTCCATTAGCTGCAAAATTTTTCAATATTTATGGTGATACTGTGAGAATTTGGGCATT
TAAAAGATTTGTTCTTTTAACTAAAGATCCAAAATTTTTCGAAGTTATTCTATCAAGTCA
AAAGCAATTAACTAAAAATAATCTTTATGATTTGATGCACGACTGGCTTGGTGGTGGACT
TTTGCTTTCAACAAATGAAAAATGGTTTCAAAGAAGAAAAATTATAACTCCAACATTTCA
TTTTAAAATATTGCAAGAATTTGTCGATGTTTTCAATTATCAGAATAATATTTTTGTTAA
AAAACTGAAAGAACTAAAGAGTGAAAATCCATTTGATATTTATAACATGGTTACATTAAT
GTCACTCGATATCATTAGTCAAACAGCAATGGGTGTTGAAATTCATGCACAAAATGATGA
TTCTGAATATGCACAAACTGTTAAAGAAATGACATACATAATTA
>g9361.t8 Gene=g9361 Length=103
MHDWLGGGLLLSTNEKWFQRRKIITPTFHFKILQEFVDVFNYQNNIFVKKLKELKSENPF
DIYNMVTLMSLDIISQTAMGVEIHAQNDDSEYAQTVKEMTYII
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g9361.t8 | Gene3D | G3DSA:1.10.630.10 | Cytochrome p450 | 1 | 103 | 0.0e+00 |
| 2 | g9361.t8 | PANTHER | PTHR24291:SF157 | CYTOCHROME P450 4V2 | 1 | 103 | 0.0e+00 |
| 3 | g9361.t8 | PANTHER | PTHR24291 | CYTOCHROME P450 FAMILY 4 | 1 | 103 | 0.0e+00 |
| 5 | g9361.t8 | PRINTS | PR00464 | Group II E-class P450 signature | 14 | 34 | 1.1e-05 |
| 4 | g9361.t8 | PRINTS | PR00464 | Group II E-class P450 signature | 68 | 86 | 1.1e-05 |
| 1 | g9361.t8 | Pfam | PF00067 | Cytochrome P450 | 3 | 99 | 0.0e+00 |
| 6 | g9361.t8 | SUPERFAMILY | SSF48264 | Cytochrome P450 | 2 | 98 | 0.0e+00 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0020037 | heme binding | MF |
| GO:0016705 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | MF |
| GO:0005506 | iron ion binding | MF |
| GO:0004497 | monooxygenase activity | MF |
| GO:0055114 | NA | NA |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed