Gene loci information

Transcript annotation

  • This transcript has been annotated as RING finger and CHY zinc finger domain-containing protein 1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g9371 g9371.t1 TTS g9371.t1 2285886 2285886
chr_1 g9371 g9371.t1 isoform g9371.t1 2286748 2288622
chr_1 g9371 g9371.t1 exon g9371.t1.exon1 2286748 2287050
chr_1 g9371 g9371.t1 cds g9371.t1.CDS1 2286748 2287050
chr_1 g9371 g9371.t1 exon g9371.t1.exon2 2287117 2287716
chr_1 g9371 g9371.t1 cds g9371.t1.CDS2 2287117 2287716
chr_1 g9371 g9371.t1 exon g9371.t1.exon3 2288503 2288622
chr_1 g9371 g9371.t1 cds g9371.t1.CDS3 2288503 2288622
chr_1 g9371 g9371.t1 TSS g9371.t1 2288762 2288762

Sequences

>g9371.t1 Gene=g9371 Length=1023
ATGGATAAAAAAAGCAAAATCCAAAAATTAAAATTAAATTCAAATAATAATGAAGAAAAC
ATATCTGCAAATAATTCAGTAAGAGGATGCACACATTACAAAAGAAAAGCGAAATTTGTG
AGTCCATGCTGTGGAAAAATTTATGTGTGCCGCTATTGTCACGATGATAATGAAGATCAC
ACATTTAATAGAAAGAATGTGACACAACTAATCTGTACAGAATGTGATACACGACAAAAA
GTGCAAATGAACTGCGAAAAATGTGGAATAAGATTTGGCCGATATACCTGCCTCATTTGT
AATTTATTTGATGATGACGATAAAGCCCAATATCACTGCGATCTTTGTGGAATATGCAGA
GTTGGAGGAAAAGATCGTTTTTTTCACTGTGAAGTCTGCAATATGTGTTTACCTATTCAG
CTAAAAACAGATGGTCATCGATGCGTTGAAAACGTGTCAAGATCAAATTGTGCTGTGTGT
CTTGAGGACATTCATACTTCTAGGATTCCTTGTCACATACCCTCATGTGGGCATTTACTT
CATCGAACTTGTTTCGAACAACTTCTTTGTTCGGGTTATTATGCATGTCCAACGTGCCAG
CAATCAATGCTCGATATGAAACAACTTTGGAATTATCTCGATAATGAAGTTATTATTACT
CCAATGCCGAAAGAGTACGAAAATTTTTATGTTGACATTTTGTGCAAAGATTGTCATCAA
GAATCAAATGTAAAGTTTCATGTAGTTGGTTTGAAATGTCAAAATGTTGAATGTGGAGGT
TACAACACAACTAGAACTCAAAAGCGCACAGAAACAAGTTCAAAAGCTGCAGCATCAACT
TCCACTTCTTCTTCAACATCATCATCATCTGATAATAAAAATGATGAGAAAAATGAGGAG
GAAGATGATGCAGCAAGTGGTGGTCGTCGTGGAAATGGTAGTAGCGGTAGTAATAGTAGC
TTTGGTGGAGACAGTGGTGCTGCTTGCTCTTCATCGAGCATTGACAGAAATCATATTGCT
TAG

>g9371.t1 Gene=g9371 Length=340
MDKKSKIQKLKLNSNNNEENISANNSVRGCTHYKRKAKFVSPCCGKIYVCRYCHDDNEDH
TFNRKNVTQLICTECDTRQKVQMNCEKCGIRFGRYTCLICNLFDDDDKAQYHCDLCGICR
VGGKDRFFHCEVCNMCLPIQLKTDGHRCVENVSRSNCAVCLEDIHTSRIPCHIPSCGHLL
HRTCFEQLLCSGYYACPTCQQSMLDMKQLWNYLDNEVIITPMPKEYENFYVDILCKDCHQ
ESNVKFHVVGLKCQNVECGGYNTTRTQKRTETSSKAAASTSTSSSTSSSSDNKNDEKNEE
EDDAASGGRRGNGSSGSNSSFGGDSGAACSSSSIDRNHIA

Protein features from InterProScan

Transcript Database ID Name Start End E.value
10 g9371.t1 CDD cd16464 RING-H2_Pirh2 156 200 2.17269E-17
9 g9371.t1 Gene3D G3DSA:3.30.40.10 Zinc/RING finger domain 150 201 6.6E-9
8 g9371.t1 Gene3D G3DSA:2.20.28.10 - 228 274 1.5E-15
12 g9371.t1 MobiDBLite mobidb-lite consensus disorder prediction 269 291 -
15 g9371.t1 MobiDBLite mobidb-lite consensus disorder prediction 269 340 -
13 g9371.t1 MobiDBLite mobidb-lite consensus disorder prediction 292 307 -
14 g9371.t1 MobiDBLite mobidb-lite consensus disorder prediction 310 340 -
3 g9371.t1 PANTHER PTHR21319:SF20 RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 14 275 4.7E-87
4 g9371.t1 PANTHER PTHR21319 RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 14 275 4.7E-87
2 g9371.t1 Pfam PF05495 CHY zinc finger 30 102 3.3E-19
1 g9371.t1 Pfam PF14599 Zinc-ribbon 204 264 4.3E-23
18 g9371.t1 ProSiteProfiles PS51266 Zinc finger CHY-type profile. 23 90 22.48
17 g9371.t1 ProSiteProfiles PS51270 Zinc finger CTCHY-type profile. 92 156 30.627
16 g9371.t1 ProSiteProfiles PS50089 Zinc finger RING-type profile. 157 200 11.058
11 g9371.t1 SMART SM00184 ring_2 157 199 0.0059
7 g9371.t1 SUPERFAMILY SSF161219 CHY zinc finger-like 25 92 5.75E-19
5 g9371.t1 SUPERFAMILY SSF161245 Zinc hairpin stack 93 150 1.57E-17
6 g9371.t1 SUPERFAMILY SSF57850 RING/U-box 156 212 9.03E-9

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0008270 zinc ion binding MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values