General information for g9371.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as RING finger and CHY zinc finger domain-containing protein 1.
Parent gene
- The parent gene g9371 is located on chr_1: 2287102..2288622 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9371 | g9371.t4 | isoform | g9371.t4 | 2285852 | 2287716 |
| chr_1 | g9371 | g9371.t4 | exon | g9371.t4.exon1 | 2285852 | 2287050 |
| chr_1 | g9371 | g9371.t4 | TTS | g9371.t4 | 2285886 | 2285886 |
| chr_1 | g9371 | g9371.t4 | cds | g9371.t4.CDS1 | 2286748 | 2287050 |
| chr_1 | g9371 | g9371.t4 | exon | g9371.t4.exon2 | 2287117 | 2287716 |
| chr_1 | g9371 | g9371.t4 | cds | g9371.t4.CDS2 | 2287117 | 2287590 |
| chr_1 | g9371 | g9371.t4 | TSS | g9371.t4 | NA | NA |
Sequences
>g9371.t4 Gene=g9371 Length=1799
AGTCCATGCTGTGGAAAAATTTATGTGTGCCGCTATTGTCACGATGATAATGAAGATCAC
ACATTTAATAGAAAGAATGTGACACAACTAATCTGTACAGAATGTGATACACGACAAAAA
GTGCAAATGAACTGCGAAAAATGTGGAATAAGATTTGGCCGATATACCTGCCTCATTTGT
AATTTATTTGATGATGACGATAAAGCCCAATATCACTGCGATCTTTGTGGAATATGCAGA
GTTGGAGGAAAAGATCGTTTTTTTCACTGTGAAGTCTGCAATATGTGTTTACCTATTCAG
CTAAAAACAGATGGTCATCGATGCGTTGAAAACGTGTCAAGATCAAATTGTGCTGTGTGT
CTTGAGGACATTCATACTTCTAGGATTCCTTGTCACATACCCTCATGTGGGCATTTACTT
CATCGAACTTGTTTCGAACAACTTCTTTGTTCGGGTTATTATGCATGTCCAACGTGCCAG
CAATCAATGCTCGATATGAAACAACTTTGGAATTATCTCGATAATGAAGTTATTATTACT
CCAATGCCGAAAGAGTACGAAAATTTTTATGTTGACATTTTGTGCAAAGATTGTCATCAA
GAATCAAATGTAAAGTTTCATGTAGTTGGTTTGAAATGTCAAAATGTTGAATGTGGAGGT
TACAACACAACTAGAACTCAAAAGCGCACAGAAACAAGTTCAAAAGCTGCAGCATCAACT
TCCACTTCTTCTTCAACATCATCATCATCTGATAATAAAAATGATGAGAAAAATGAGGAG
GAAGATGATGCAGCAAGTGGTGGTCGTCGTGGAAATGGTAGTAGCGGTAGTAATAGTAGC
TTTGGTGGAGACAGTGGTGCTGCTTGCTCTTCATCGAGCATTGACAGAAATCATATTGCT
TAGCCATACATCAAAAAATTTTCAAATTTTGCAGGATAAACGTTATAAACGACGCACACA
CACACACATACCATATTTAAATCATTCCTTTTAAAAAGAAATTGAGAGAATCTTTAATGA
ACTAAAATTGCTCAGTTTTAATTTATACAACGAAAGGATAAACGCATAAAATTCAATATT
ATACTTTATACAAATTTCATAATCTCAAGTTACAAACATACGTATGTGAAAAAAATTGAG
ATATAGATCCTATTCAAATATATCTAATAATAATTATAGATCTTGCCATAATTCAGAATC
TATCGGTATACAACAACAAGATAATAGCATTTTTGATGTAATAAAAAATTTACTTCTTTT
CTTTTTATAAATATTCAGTATGAATGAATGAAGGCAGCAAAGCAATATGAGAAGGCAATT
AATTGAATCTCGAACCAATCAATTAGGCACAAATAATATTCTCAAGTGATAACGATAAAA
AAAGACAGCAAACTACCTTATCCTACATTCATACGCATTTTCTAGTAGTTCCAGTATTGT
CTATAATCTTGAAAGCTGAAAAATGAATTCTTTAAATCTCATAAACAAATGTATTCGAAA
ATATTCTTTAGTATGTACTTATGTAGTTCTTGCTTTTTATGTTTTATTATAATTGATGAA
TTGTTCTGCAATATTACAAAATGGTGTTCAATTATATTTTTTTTGTCATTTATATAAATT
TTATAATTCTCTTGCTCGAAAAGAAACGTGAAAAATTCCATAAAATGCTTTATTGAACCA
TGTAATAATTTTACAACAATTCATTCTCTTAAAGCATCAGTTTTATATAAAACAAATTGA
GAGTTGAATAAAAATCAAGAGTAAGAAATCAGTGCAGTAGAATACTACTTCTTTTCAGT
>g9371.t4 Gene=g9371 Length=258
MNCEKCGIRFGRYTCLICNLFDDDDKAQYHCDLCGICRVGGKDRFFHCEVCNMCLPIQLK
TDGHRCVENVSRSNCAVCLEDIHTSRIPCHIPSCGHLLHRTCFEQLLCSGYYACPTCQQS
MLDMKQLWNYLDNEVIITPMPKEYENFYVDILCKDCHQESNVKFHVVGLKCQNVECGGYN
TTRTQKRTETSSKAAASTSTSSSTSSSSDNKNDEKNEEEDDAASGGRRGNGSSGSNSSFG
GDSGAACSSSSIDRNHIA
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g9371.t4 | CDD | cd16464 | RING-H2_Pirh2 | 74 | 118 | 1.51062E-17 |
| 7 | g9371.t4 | Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain | 68 | 119 | 4.3E-9 |
| 6 | g9371.t4 | Gene3D | G3DSA:2.20.28.10 | - | 146 | 192 | 9.8E-16 |
| 11 | g9371.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 187 | 258 | - |
| 14 | g9371.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 187 | 209 | - |
| 12 | g9371.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 210 | 225 | - |
| 13 | g9371.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 228 | 258 | - |
| 2 | g9371.t4 | PANTHER | PTHR21319:SF20 | RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 | 2 | 193 | 1.3E-62 |
| 3 | g9371.t4 | PANTHER | PTHR21319 | RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 | 2 | 193 | 1.3E-62 |
| 1 | g9371.t4 | Pfam | PF14599 | Zinc-ribbon | 122 | 182 | 2.7E-23 |
| 9 | g9371.t4 | ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 48 | 117 | - |
| 16 | g9371.t4 | ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 10 | 74 | 30.627 |
| 15 | g9371.t4 | ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 75 | 118 | 11.058 |
| 10 | g9371.t4 | SMART | SM00184 | ring_2 | 75 | 117 | 0.0059 |
| 4 | g9371.t4 | SUPERFAMILY | SSF161245 | Zinc hairpin stack | 11 | 68 | 9.94E-18 |
| 5 | g9371.t4 | SUPERFAMILY | SSF57850 | RING/U-box | 74 | 130 | 4.42E-9 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
