General information for g9371.t6
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as RING finger and CHY zinc finger domain-containing protein 1.
Parent gene
- The parent gene g9371 is located on chr_1: 2287102..2288622 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9371 | g9371.t6 | TTS | g9371.t6 | 2285886 | 2285886 |
| chr_1 | g9371 | g9371.t6 | isoform | g9371.t6 | 2286748 | 2288622 |
| chr_1 | g9371 | g9371.t6 | exon | g9371.t6.exon1 | 2286748 | 2287050 |
| chr_1 | g9371 | g9371.t6 | cds | g9371.t6.CDS1 | 2287001 | 2287050 |
| chr_1 | g9371 | g9371.t6 | exon | g9371.t6.exon2 | 2287113 | 2287716 |
| chr_1 | g9371 | g9371.t6 | cds | g9371.t6.CDS2 | 2287113 | 2287716 |
| chr_1 | g9371 | g9371.t6 | exon | g9371.t6.exon3 | 2288503 | 2288622 |
| chr_1 | g9371 | g9371.t6 | cds | g9371.t6.CDS3 | 2288503 | 2288622 |
| chr_1 | g9371 | g9371.t6 | TSS | g9371.t6 | 2288762 | 2288762 |
Sequences
>g9371.t6 Gene=g9371 Length=1027
ATGGATAAAAAAAGCAAAATCCAAAAATTAAAATTAAATTCAAATAATAATGAAGAAAAC
ATATCTGCAAATAATTCAGTAAGAGGATGCACACATTACAAAAGAAAAGCGAAATTTGTG
AGTCCATGCTGTGGAAAAATTTATGTGTGCCGCTATTGTCACGATGATAATGAAGATCAC
ACATTTAATAGAAAGAATGTGACACAACTAATCTGTACAGAATGTGATACACGACAAAAA
GTGCAAATGAACTGCGAAAAATGTGGAATAAGATTTGGCCGATATACCTGCCTCATTTGT
AATTTATTTGATGATGACGATAAAGCCCAATATCACTGCGATCTTTGTGGAATATGCAGA
GTTGGAGGAAAAGATCGTTTTTTTCACTGTGAAGTCTGCAATATGTGTTTACCTATTCAG
CTAAAAACAGATGGTCATCGATGCGTTGAAAACGTGTCAAGATCAAATTGTGCTGTGTGT
CTTGAGGACATTCATACTTCTAGGATTCCTTGTCACATACCCTCATGTGGGCATTTACTT
CATCGAACTTGTTTCGAACAACTTCTTTGTTCGGGTTATTATGCATGTCCAACGTGCCAG
CAATCAATGCTCGATATGAAACAACTTTGGAATTATCTCGATAATGAAGTTATTATTACT
CCAATGCCGAAAGAGTACGAAAATTTTTATGTTGACATTTTGTGCAAAGATTGTCATCAA
GTGAGAATCAAATGTAAAGTTTCATGTAGTTGGTTTGAAATGTCAAAATGTTGAATGTGG
AGGTTACAACACAACTAGAACTCAAAAGCGCACAGAAACAAGTTCAAAAGCTGCAGCATC
AACTTCCACTTCTTCTTCAACATCATCATCATCTGATAATAAAAATGATGAGAAAAATGA
GGAGGAAGATGATGCAGCAAGTGGTGGTCGTCGTGGAAATGGTAGTAGCGGTAGTAATAG
TAGCTTTGGTGGAGACAGTGGTGCTGCTTGCTCTTCATCGAGCATTGACAGAAATCATAT
TGCTTAG
>g9371.t6 Gene=g9371 Length=257
MDKKSKIQKLKLNSNNNEENISANNSVRGCTHYKRKAKFVSPCCGKIYVCRYCHDDNEDH
TFNRKNVTQLICTECDTRQKVQMNCEKCGIRFGRYTCLICNLFDDDDKAQYHCDLCGICR
VGGKDRFFHCEVCNMCLPIQLKTDGHRCVENVSRSNCAVCLEDIHTSRIPCHIPSCGHLL
HRTCFEQLLCSGYYACPTCQQSMLDMKQLWNYLDNEVIITPMPKEYENFYVDILCKDCHQ
VRIKCKVSCSWFEMSKC
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 13 | g9371.t6 | CDD | cd16464 | RING-H2_Pirh2 | 156 | 200 | 0.0000 |
| 9 | g9371.t6 | Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain | 150 | 201 | 0.0000 |
| 3 | g9371.t6 | PANTHER | PTHR21319:SF20 | RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 | 14 | 246 | 0.0000 |
| 4 | g9371.t6 | PANTHER | PTHR21319 | RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 | 14 | 246 | 0.0000 |
| 2 | g9371.t6 | Pfam | PF05495 | CHY zinc finger | 30 | 102 | 0.0000 |
| 1 | g9371.t6 | Pfam | PF14599 | Zinc-ribbon | 204 | 241 | 0.0000 |
| 12 | g9371.t6 | ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 23 | 90 | 22.4800 |
| 11 | g9371.t6 | ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 92 | 156 | 30.6270 |
| 10 | g9371.t6 | ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 157 | 200 | 11.0580 |
| 8 | g9371.t6 | SMART | SM00184 | ring_2 | 157 | 199 | 0.0059 |
| 7 | g9371.t6 | SUPERFAMILY | SSF161219 | CHY zinc finger-like | 25 | 92 | 0.0000 |
| 5 | g9371.t6 | SUPERFAMILY | SSF161245 | Zinc hairpin stack | 93 | 150 | 0.0000 |
| 6 | g9371.t6 | SUPERFAMILY | SSF57850 | RING/U-box | 156 | 212 | 0.0000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0008270 | zinc ion binding | MF |
KEGG
Orthology
- This transcript has been annotated with K10144 (RING finger and CHY zinc finger domain-containing protein 1)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
