General information for g9374.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Deoxyuridine 5’-triphosphate nucleotidohydrolase, mitochondrial.
Parent gene
- The parent gene g9374 is located on chr_1: 2292602..2293126 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9374 | g9374.t3 | isoform | g9374.t3 | 2289855 | 2293126 |
| chr_1 | g9374 | g9374.t3 | exon | g9374.t3.exon1 | 2289855 | 2289959 |
| chr_1 | g9374 | g9374.t3 | exon | g9374.t3.exon2 | 2292506 | 2292941 |
| chr_1 | g9374 | g9374.t3 | cds | g9374.t3.CDS1 | 2292602 | 2292941 |
| chr_1 | g9374 | g9374.t3 | exon | g9374.t3.exon3 | 2292996 | 2293126 |
| chr_1 | g9374 | g9374.t3 | cds | g9374.t3.CDS2 | 2292996 | 2293126 |
| chr_1 | g9374 | g9374.t3 | TSS | g9374.t3 | 2293210 | 2293210 |
| chr_1 | g9374 | g9374.t3 | TTS | g9374.t3 | NA | NA |
Sequences
>g9374.t3 Gene=g9374 Length=672
ATGCCAGCTGATAATCAAACACAAGTCAAAATGATTGAGCCGACACAGATTTTGCGTTTT
GCCAAATTGACAGATCATGCTTTTGCACCAATAAAAGCATCGGAAAAAGCAGCTGGGTTT
GATTTGAAAAGCGCATATGATTGCATTGTTCCTGCTCATGGTAAGCAAATTGTCAAGACA
GATATTCAAATTGAACTTCCTTCTGGATGTTATGGAAGAATTGCTCCACGTTCGGGCTTA
GCAGCTAAAAATTTCATTGATATTGGAGCTGGTGTTGTTGACGAAGATTACCGAGGAAAT
ATAGGAGTTGTCATGTTCAATCATAGTGATGTGGATTTTCATATTGCTAAAGGAGATCGA
ATTGCACAATTAATTTGTGAAAGAATCTTTTATCCACAATTAGAAGAGTGCTCTTCATTG
ACCGAAACACAACGTGGCGAAGGAGGTTTTGGAAGTACTGGAACAAACTAAATCATATAT
CATTGATCTCTTAAGAATTTGTTTAACCACATTACATTCTTTCATAAAAATAAAGTCAGA
ATTCATTTTTTTCACATAAATTCCTTTGCATCGCACGGGTAGTTTTCTTTTGAAAAAGTG
CTAATTGAGATTCGACATAATCGATATGACACAAATTTGCATCTTCAATTTGATCAATTA
GTTCTTGAAATA
>g9374.t3 Gene=g9374 Length=156
MPADNQTQVKMIEPTQILRFAKLTDHAFAPIKASEKAAGFDLKSAYDCIVPAHGKQIVKT
DIQIELPSGCYGRIAPRSGLAAKNFIDIGAGVVDEDYRGNIGVVMFNHSDVDFHIAKGDR
IAQLICERIFYPQLEECSSLTETQRGEGGFGSTGTN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g9374.t3 | CDD | cd07557 | trimeric_dUTPase | 38 | 125 | 0 |
| 4 | g9374.t3 | Gene3D | G3DSA:2.70.40.10 | - | 14 | 155 | 0 |
| 2 | g9374.t3 | PANTHER | PTHR11241 | DEOXYURIDINE 5’-TRIPHOSPHATE NUCLEOTIDOHYDROLASE | 8 | 154 | 0 |
| 1 | g9374.t3 | Pfam | PF00692 | dUTPase | 29 | 154 | 0 |
| 3 | g9374.t3 | SUPERFAMILY | SSF51283 | dUTPase-like | 15 | 155 | 0 |
| 5 | g9374.t3 | TIGRFAM | TIGR00576 | dut: dUTP diphosphatase | 18 | 154 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0000287 | magnesium ion binding | MF |
| GO:0046081 | dUTP catabolic process | BP |
| GO:0006226 | dUMP biosynthetic process | BP |
| GO:0004170 | dUTP diphosphatase activity | MF |
KEGG
Orthology
- This transcript has been annotated with K01520 (dUTP pyrophosphatase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
