General information for g9376.t13
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g9376 is located on chr_1: 2300541..2301045 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9376 | g9376.t13 | TTS | g9376.t13 | 2299024 | 2299024 |
| chr_1 | g9376 | g9376.t13 | isoform | g9376.t13 | 2299850 | 2301045 |
| chr_1 | g9376 | g9376.t13 | exon | g9376.t13.exon1 | 2299850 | 2300046 |
| chr_1 | g9376 | g9376.t13 | cds | g9376.t13.CDS1 | 2299851 | 2300046 |
| chr_1 | g9376 | g9376.t13 | exon | g9376.t13.exon2 | 2300115 | 2300365 |
| chr_1 | g9376 | g9376.t13 | cds | g9376.t13.CDS2 | 2300115 | 2300365 |
| chr_1 | g9376 | g9376.t13 | exon | g9376.t13.exon3 | 2300437 | 2300541 |
| chr_1 | g9376 | g9376.t13 | cds | g9376.t13.CDS3 | 2300437 | 2300541 |
| chr_1 | g9376 | g9376.t13 | exon | g9376.t13.exon4 | 2300630 | 2300745 |
| chr_1 | g9376 | g9376.t13 | cds | g9376.t13.CDS4 | 2300630 | 2300745 |
| chr_1 | g9376 | g9376.t13 | exon | g9376.t13.exon5 | 2300964 | 2301045 |
| chr_1 | g9376 | g9376.t13 | cds | g9376.t13.CDS5 | 2300964 | 2301045 |
| chr_1 | g9376 | g9376.t13 | TSS | g9376.t13 | 2301161 | 2301161 |
Sequences
>g9376.t13 Gene=g9376 Length=751
ATGTTAAAAACTGCAGCTCCCGACAATAACAAGGATACATTGCTTGAAAAATCAATGATA
CCCATCATTGATGTTTCATTTGGCACGGAAGAAATTCCTCAGAAATCGGTTGTAAATCGT
ATCGCTACACAGATAACAAAAGCCTTTAGAGAGAAGGGTATGGCTTTGTTAGTAAATCAT
GGCATCACAGAAGAAAAGTTGAAAATTGCGTACAATTATTTCGATGAATTTTGCAAACTT
CCCGAAGACACGAAAAATATCTATTTGAGAAAAAGTGAAACTGGAAATGGTGGCTATGTA
AAGCCTAATCAAGAAAGTTTCGAAAAAGGGAAAAAGGAAATTCGTCATGCTTTTAATATT
TGCACACTTGATGCAAAATTGCCTGACGATCCATTGCCAGGTTTTAAAAAACATATTAGT
GAACTTGCAAAAGATTTCAAAAACATCACTAGTTTGCTATTACAAGCACTTGCAATTGGC
TTAGAGCTTCCAGCCAATTTCTTTGTAGAAAAACACTCACACATGCTTGATTGCGATAAC
GAAACAACATTTCGATTGCTCTATTATCCACCATTGGTTATTGATGATGATAAAAATGAA
AATTTCACTAAAGGATCTTCAACATATTGCCATCAAAAAACCAAATTTGATGAATCGAAA
TTGGGTTCACTCGACATGAAGGATAAAGAAAATGATCAAGAGGAAACACATATTAAAAAA
GAGGAAGTTCAAAATTTCACTCGATGTGGAG
>g9376.t13 Gene=g9376 Length=250
MLKTAAPDNNKDTLLEKSMIPIIDVSFGTEEIPQKSVVNRIATQITKAFREKGMALLVNH
GITEEKLKIAYNYFDEFCKLPEDTKNIYLRKSETGNGGYVKPNQESFEKGKKEIRHAFNI
CTLDAKLPDDPLPGFKKHISELAKDFKNITSLLLQALAIGLELPANFFVEKHSHMLDCDN
ETTFRLLYYPPLVIDDDKNENFTKGSSTYCHQKTKFDESKLGSLDMKDKENDQEETHIKK
EEVQNFTRCG
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g9376.t13 | Gene3D | G3DSA:2.60.120.330 | - | 9 | 213 | 0 |
| 2 | g9376.t13 | PANTHER | PTHR10209 | OXIDOREDUCTASE, 2OG-FE II OXYGENASE FAMILY PROTEIN | 18 | 193 | 0 |
| 1 | g9376.t13 | Pfam | PF14226 | non-haem dioxygenase in morphine synthesis N-terminal | 20 | 125 | 0 |
| 3 | g9376.t13 | SUPERFAMILY | SSF51197 | Clavaminate synthase-like | 18 | 196 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
