General information for g9376.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g9376 is located on chr_1: 2300541..2301045 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9376 | g9376.t2 | TTS | g9376.t2 | 2299024 | 2299024 |
| chr_1 | g9376 | g9376.t2 | isoform | g9376.t2 | 2299164 | 2300047 |
| chr_1 | g9376 | g9376.t2 | exon | g9376.t2.exon1 | 2299164 | 2299415 |
| chr_1 | g9376 | g9376.t2 | cds | g9376.t2.CDS1 | 2299164 | 2299415 |
| chr_1 | g9376 | g9376.t2 | exon | g9376.t2.exon2 | 2299474 | 2299637 |
| chr_1 | g9376 | g9376.t2 | cds | g9376.t2.CDS2 | 2299474 | 2299637 |
| chr_1 | g9376 | g9376.t2 | exon | g9376.t2.exon3 | 2299842 | 2300047 |
| chr_1 | g9376 | g9376.t2 | cds | g9376.t2.CDS3 | 2299842 | 2299857 |
| chr_1 | g9376 | g9376.t2 | TSS | g9376.t2 | NA | NA |
Sequences
>g9376.t2 Gene=g9376 Length=622
GATTGCTCTATTATCCACCATTGGTTATTGATGATGATAAAAATGAAAATTTCACTAAAG
GATCTTCAACATATTGCCATCAAAAAACCAAATTTGATGAATCGAAATTGGGTTCACTCG
ACATGAAGGATAAAGAAAATGATCAAGAGGAAACACATATTAAAAAAGAGGAAGTTCAAA
ATTTCACTCGATGTGGAGCTCATTGTACTTATATTTATTTCTTTATTTTTATTTGTATTG
TCTAGGTGGACTTGAAGTTAAATTGCCAAATAGTGAAAAGTGGCAAAGGGTAGGTCATCT
TGGTGGTGCCATTTTTGCGAATGTTGGTGAACTTTTGTCAATATGGACTAATGGAGCTTA
TCCTGCCTTAAACCATCGAGTTGTTATTCCTGAAAATTCAATAGCAACCACAAAGGGTCG
ACATGCAATTGCCTATTTTGTTCATCCTGATAATTTAACTCCAATTGTGCCTATGGATGT
TTCGCCACCATCGTCTTCTCAAGAAGCAATAAATGAGAAGAAAGAAAAGACAAGGAAAAA
GTCATTTAAAGCGGCAAAAATGAAAATTTACAACGCATATCAACATGTTCAGAGAAGATT
TAAAGAAACTTATGCATCATAA
>g9376.t2 Gene=g9376 Length=143
MWSSLYLYLFLYFYLYCLGGLEVKLPNSEKWQRVGHLGGAIFANVGELLSIWTNGAYPAL
NHRVVIPENSIATTKGRHAIAYFVHPDNLTPIVPMDVSPPSSSQEAINEKKEKTRKKSFK
AAKMKIYNAYQHVQRRFKETYAS
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g9376.t2 | Gene3D | G3DSA:2.60.120.330 | - | 15 | 143 | 2.0E-21 |
| 4 | g9376.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 97 | 117 | - |
| 1 | g9376.t2 | Pfam | PF03171 | 2OG-Fe(II) oxygenase superfamily | 18 | 86 | 1.1E-8 |
| 8 | g9376.t2 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 5 | - |
| 9 | g9376.t2 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 6 | 23 | - |
| 7 | g9376.t2 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 24 | 143 | - |
| 3 | g9376.t2 | SUPERFAMILY | SSF51197 | Clavaminate synthase-like | 17 | 141 | 2.27E-21 |
| 5 | g9376.t2 | SignalP_EUK | SignalP-noTM | SignalP-noTM | 1 | 19 | - |
| 2 | g9376.t2 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 4 | 23 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0055114 | NA | NA |
| GO:0016491 | oxidoreductase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
