General information for g9379.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Luciferin 4-monooxygenase.
Parent gene
- The parent gene g9379 is located on chr_1: 2319386..2321140 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9379 | g9379.t1 | TSS | g9379.t1 | 2319355 | 2319355 |
| chr_1 | g9379 | g9379.t1 | isoform | g9379.t1 | 2319386 | 2321140 |
| chr_1 | g9379 | g9379.t1 | exon | g9379.t1.exon1 | 2319386 | 2319991 |
| chr_1 | g9379 | g9379.t1 | cds | g9379.t1.CDS1 | 2319386 | 2319991 |
| chr_1 | g9379 | g9379.t1 | exon | g9379.t1.exon2 | 2320044 | 2320096 |
| chr_1 | g9379 | g9379.t1 | cds | g9379.t1.CDS2 | 2320044 | 2320096 |
| chr_1 | g9379 | g9379.t1 | exon | g9379.t1.exon3 | 2320156 | 2321140 |
| chr_1 | g9379 | g9379.t1 | cds | g9379.t1.CDS3 | 2320156 | 2321140 |
| chr_1 | g9379 | g9379.t1 | TTS | g9379.t1 | NA | NA |
Sequences
>g9379.t1 Gene=g9379 Length=1644
ATGACAACTTATGATGCAGAATCAAAAATTTGGAAAGGTGTTTCAATTCCATTTGATGAA
AATAGTGAAAATTTGGGAGAAATAATTTTGAAAATTCTATCGGAAACTCCAGAACGAGTT
TTACAAATTGATTCGGAAACTGATGAACAATTTACATGTCAAGATTTAAAACTTTCTTCA
ATTCGTGTAGCTCAAAATTTAGAACGAATTGGCGTTGAAGTAGATGACATTGTTGGAATT
ATTTCTAAGCAATCACACTTTGCAACTTCTATCATCATTGGTTGCATCATTCATGGAGCA
ATTTTAAATCCACTTGACGAAACACTCAATGAAAATGACATTGCAAATATTTTTAATCTA
ACTAAGCCAAAAATTATCATTACTGAGCCAAGTTTTATACCTAAACTTCAAAATGCTTTA
AAAAGTGCCACTTTTAATTATCGGATTTATTCAATTACTGATAAAAGTTCACTTTTTTTA
AGAGCTTCAAATTTTATCAAACCAACGGGAACTGAAGAAAACTTCGTTGCTCCGAAATTT
GCTAAGTCATTAAGAGAAAAATTGTATGCAATTTTATGCAGTTCAGGAACTACTGGAACT
CCAAAAGGAGTTTGCATGTCTCATCTATTATCAACTTCTACAGCAAGTTTCGTAAAAATA
TTTTCTGGAGATAGAGGTGCTATTCGTTCCTATTGCCCAAGTCCAATTTATTGGGCAAGT
GGATTTTATCAAAATGTTCTTCCGATTTTCTCACCAAATGAAATTCGTATTATTCCTAGT
AACAAACCTTGGTATATTGAAGATTTTCTAAAACTTGTTGAAAAATACAAATTGACTCAA
GCTTTAATGCCATCAATGGACTTACATATGTTTGTAAATTTCAAAAATCTTTCATCATAT
GATTTGGAAAGTTTGACAAATATCATGACAGGTGGGACAATAATTTCAAAAGTTCTTCGT
GATAAATTTGCAGCAACTTTTCCTAATAAAAATTTACAAGTTGCATATGGAATGACTGAA
AGCGGAGGAACAATATCAAAACCAGGAGAATATAAATTAGAATATTCTGCTGGGTCAATT
GTTCTTCCAAATCATGAAATCAAAATTGTTGATGATGATGGAAATAAATTGGGTATTAAT
GAAAAGGGTGAAATTTGCATAAAATCAAAGTATGGATTTGCTGGCTATTATAACAATCCA
GAAGCTACTAAAAAGGCAGTTGATGATGAAGGATTTATCATAACTGGTGATATTGGGTAT
TTTAATGAGGACAACATTCTTTTCGTATTTGATCGTAAGAAGGATGTCATAAAATCGAAA
AGAATGAATGTGAGTGCATCAGAAATCGAGAATATAATTCAAGAAATTGAAGGTGTTGAA
TTTGTCACAATTGTCAGTATACCTGATGATTTACTACAAAATTTAATTGTTGCCGCAGTC
ATCAAACAAAAGGGATTTGAAAAATTGAGAGAGAAATCTATAGTTGATTACGTGGCTAGT
AAATTACCAGATGAAAAACACTTAAGTGGTGGTGTTTACTTTTTTGATAAATTCCCATTG
ACACCATCTGGGAAAGTAAAGAAAAGTCTTTTACTGGAAGAGATTATGAAAATTAGAAAA
ATCAGTAATGGTTACCATCAATAA
>g9379.t1 Gene=g9379 Length=547
MTTYDAESKIWKGVSIPFDENSENLGEIILKILSETPERVLQIDSETDEQFTCQDLKLSS
IRVAQNLERIGVEVDDIVGIISKQSHFATSIIIGCIIHGAILNPLDETLNENDIANIFNL
TKPKIIITEPSFIPKLQNALKSATFNYRIYSITDKSSLFLRASNFIKPTGTEENFVAPKF
AKSLREKLYAILCSSGTTGTPKGVCMSHLLSTSTASFVKIFSGDRGAIRSYCPSPIYWAS
GFYQNVLPIFSPNEIRIIPSNKPWYIEDFLKLVEKYKLTQALMPSMDLHMFVNFKNLSSY
DLESLTNIMTGGTIISKVLRDKFAATFPNKNLQVAYGMTESGGTISKPGEYKLEYSAGSI
VLPNHEIKIVDDDGNKLGINEKGEICIKSKYGFAGYYNNPEATKKAVDDEGFIITGDIGY
FNEDNILFVFDRKKDVIKSKRMNVSASEIENIIQEIEGVEFVTIVSIPDDLLQNLIVAAV
IKQKGFEKLREKSIVDYVASKLPDEKHLSGGVYFFDKFPLTPSGKVKKSLLLEEIMKIRK
ISNGYHQ
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g9379.t1 | Gene3D | G3DSA:3.40.50.12780 | - | 7 | 435 | 2.2E-89 |
| 8 | g9379.t1 | Gene3D | G3DSA:3.30.300.30 | - | 436 | 539 | 2.8E-19 |
| 3 | g9379.t1 | PANTHER | PTHR24096:SF353 | GH16244P-RELATED | 2 | 539 | 2.9E-132 |
| 4 | g9379.t1 | PANTHER | PTHR24096 | LONG-CHAIN-FATTY-ACID–COA LIGASE | 2 | 539 | 2.9E-132 |
| 2 | g9379.t1 | Pfam | PF00501 | AMP-binding enzyme | 35 | 439 | 1.2E-69 |
| 1 | g9379.t1 | Pfam | PF13193 | AMP-binding enzyme C-terminal domain | 448 | 525 | 1.1E-7 |
| 6 | g9379.t1 | ProSitePatterns | PS00455 | Putative AMP-binding domain signature. | 191 | 202 | - |
| 5 | g9379.t1 | SUPERFAMILY | SSF56801 | Acetyl-CoA synthetase-like | 22 | 534 | 3.27E-98 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed