General information for g9380.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g9380 is located on chr_1: 2326116..2326688 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9380 | g9380.t2 | TSS | g9380.t2 | 2324563 | 2324563 |
| chr_1 | g9380 | g9380.t2 | isoform | g9380.t2 | 2324610 | 2325491 |
| chr_1 | g9380 | g9380.t2 | exon | g9380.t2.exon1 | 2324610 | 2324964 |
| chr_1 | g9380 | g9380.t2 | cds | g9380.t2.CDS1 | 2324610 | 2324912 |
| chr_1 | g9380 | g9380.t2 | exon | g9380.t2.exon2 | 2325017 | 2325336 |
| chr_1 | g9380 | g9380.t2 | exon | g9380.t2.exon3 | 2325391 | 2325491 |
| chr_1 | g9380 | g9380.t2 | TTS | g9380.t2 | NA | NA |
Sequences
>g9380.t2 Gene=g9380 Length=776
ATGAAAGAAATTCAAAGTGAAAAATTAAAATCGACTGAAAATCGTTTTGCTGTTTCACTA
ACCGATCACGTGAAAATCTTCACAAGTGAAAATGAAATTTCACCACGTGATGTACAAACA
ATTCCTGAAGTATTCGATCAAATTTGTGAGAAATTCAGCAATCACAATGCTTTGATGTTC
AAAGTCAAAGGTGAAAATGATTGGAATGCAATCACTTATGGAGAATACAAAAATCGAGTT
GAAAAAATTGCAAAATCTTCATTAAAATTGGACTTGAAGAATTCGGAACTGTTGCAGTTT
TAGCTTCAAATAGTGTCGAATGGTTTTTATCTTATTTGGCTGCAATTCATGCTGGTGGAA
TAATAACTGGAATTTATACAACAAATTCACCTGATGCTTGCCATCATATTCTTGAAAGTT
CAAAGGCTAACATTGTTGTTGTTGACAATGATGAACAATTGCAGAAAATTCTTAAAATCA
AAGACAAATTGCCAAATTTAAAAGCAATTGTTCAAACTTTTCCATCAAAAATTTCAACTG
ATGAGAAAATTTATAAATGGCAAGAAGTTGAAATGATGGAAATTGATGATGAAATTGTTG
AAATTTATCAAGAAAGACTTTCGAAAATCAAAGCTAATGCATGTTGTAATATCATTTATA
CTTCAGGAACAACTGGTAATCCAAAAGGAGTAATGCTTAGTCACGATAATCTCGTTTGGA
ATGCTCAAAATTTTGCTAATGCACATGGAACTTTTAAATTAGGTGAAGAAATTATG
>g9380.t2 Gene=g9380 Length=100
MKEIQSEKLKSTENRFAVSLTDHVKIFTSENEISPRDVQTIPEVFDQICEKFSNHNALMF
KVKGENDWNAITYGEYKNRVEKIAKSSLKLDLKNSELLQF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value |
|---|---|---|---|---|---|---|
| g9380.t2 | SUPERFAMILY | SSF56801 | Acetyl-CoA synthetase-like | 30 | 86 | 1.04e-05 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed