General information for g9380.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Very long-chain-fatty-acid–CoA ligase bubblegum.
Parent gene
- The parent gene g9380 is located on chr_1: 2326116..2326688 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9380 | g9380.t3 | isoform | g9380.t3 | 2326116 | 2326688 |
| chr_1 | g9380 | g9380.t3 | exon | g9380.t3.exon1 | 2326116 | 2326688 |
| chr_1 | g9380 | g9380.t3 | cds | g9380.t3.CDS1 | 2326134 | 2326688 |
| chr_1 | g9380 | g9380.t3 | TTS | g9380.t3 | 2326910 | 2326910 |
| chr_1 | g9380 | g9380.t3 | TSS | g9380.t3 | NA | NA |
Sequences
>g9380.t3 Gene=g9380 Length=573
AATGATATTGAGAAGACAATGGAAGTGATTGATAAAGATTTTTGGTTTAATACTGGCGAT
GTTGGATATTTTGATGATGAAGAATTTTTATTTATAACTGGAAGAACTAAAGAGCTGATA
GTATCATCAGGTGGTGAAAATATTCCTTATCTTTTGATTGAAAATACTGTGAAAAATGAA
TGTGAAGCAATTTCAAATGCTTTCTTAGTTGGTGACAAAAGAAAATTTCTGACAATGTTG
ATAACTTTGAAAACTAAAATGGACCAAAATGGTGCAGCAACTGATGAACTTGCTGATGAA
AGTTTGACTTTAATGAAAGATTTAGGTTTGAATTATGTTTCATTGAGTGAAGTTCTCAAT
GTTGGACCTGATAAGAAAGTTTTAACTGCAATTCAATCAGCAATCGATCGTGCAAATGAA
AAAGCAATTTCAAGAGCTCAAAAAGTTCAAAAATTTGCAATTTTACCAAATGATTTTAGT
TTATCAACTGGAGAATTGAGTTCAACATTGAAGCTGAAAAGACATTTTGTTCTAGAAAAA
TATAAGAAAATTATTGATGAATTTTATTTGTAA
>g9380.t3 Gene=g9380 Length=184
MEVIDKDFWFNTGDVGYFDDEEFLFITGRTKELIVSSGGENIPYLLIENTVKNECEAISN
AFLVGDKRKFLTMLITLKTKMDQNGAATDELADESLTLMKDLGLNYVSLSEVLNVGPDKK
VLTAIQSAIDRANEKAISRAQKVQKFAILPNDFSLSTGELSSTLKLKRHFVLEKYKKIID
EFYL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g9380.t3 | Gene3D | G3DSA:3.40.50.12780 | - | 1 | 33 | 0 |
| 1 | g9380.t3 | PANTHER | PTHR43272 | LONG-CHAIN-FATTY-ACID–COA LIGASE | 2 | 183 | 0 |
| 2 | g9380.t3 | PANTHER | PTHR43272:SF32 | LONG-CHAIN-FATTY-ACID–COA LIGASE ACSBG2 | 2 | 183 | 0 |
| 3 | g9380.t3 | SUPERFAMILY | SSF56801 | Acetyl-CoA synthetase-like | 4 | 183 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed