General information for g9384.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative ABC transporter G family member 23.
Parent gene
- The parent gene g9384 is located on chr_1: 2386738..2389325 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9384 | g9384.t1 | isoform | g9384.t1 | 2386738 | 2389325 |
| chr_1 | g9384 | g9384.t1 | exon | g9384.t1.exon1 | 2386738 | 2386871 |
| chr_1 | g9384 | g9384.t1 | cds | g9384.t1.CDS1 | 2386738 | 2386871 |
| chr_1 | g9384 | g9384.t1 | exon | g9384.t1.exon2 | 2386929 | 2387723 |
| chr_1 | g9384 | g9384.t1 | cds | g9384.t1.CDS2 | 2386929 | 2387723 |
| chr_1 | g9384 | g9384.t1 | exon | g9384.t1.exon3 | 2388073 | 2388624 |
| chr_1 | g9384 | g9384.t1 | cds | g9384.t1.CDS3 | 2388073 | 2388624 |
| chr_1 | g9384 | g9384.t1 | exon | g9384.t1.exon4 | 2388688 | 2389050 |
| chr_1 | g9384 | g9384.t1 | cds | g9384.t1.CDS4 | 2388688 | 2389050 |
| chr_1 | g9384 | g9384.t1 | exon | g9384.t1.exon5 | 2389112 | 2389325 |
| chr_1 | g9384 | g9384.t1 | cds | g9384.t1.CDS5 | 2389112 | 2389325 |
| chr_1 | g9384 | g9384.t1 | TSS | g9384.t1 | NA | NA |
| chr_1 | g9384 | g9384.t1 | TTS | g9384.t1 | NA | NA |
Sequences
>g9384.t1 Gene=g9384 Length=2058
ATGCATTTCAGTTTAAAGTTATTTGAGATGTCAAGCATTCAAGTCCGTAAATTATCTAAA
AATTATCAAGAATTTGGAAAAAATTCGCAAAATATTTTATGCAATTTTAATTTAACAATA
AAATATGGATCAATTTATTCATTGGTTGGTTCATCAGGATGTGGTAAAACAACATTTTTA
AATTGTCTGCTTGCCATGCAAAAGATTGATGAAGGAGAAATTAAAATTTTCAATCAACAA
GTGAAATTTCCAAATCTTAAAAGTCTTTCAAAATTAATTGGTTTTATGCCACAACATATT
GCTCTTGCCTCTCAATTGACAATAAATGAAACTTTTCATTATTTTGCATCTTTACAATTG
ATTGATGATAAAACTCTTAAAGAACGTTCAAAAATGCTTTGTGACTTACTTTGCCTGCCA
TCAAAAGATTCATTAATAGGAAAAATTTCAAATGGTCAACAACGAAGAGTTTCATTTGCT
GTTGCTGTTTTGCATGATCCAAAATTGCTTATTCTTGATGAACCAACTGTTGGACTTGAC
TGTGAAATAAGACAAAGAATTTGGAAATTTCTTCATCAACAATCAAGTGAGAAAAATATC
ACAATTCTTTTTACAACTCAATATTTAACTGAAGTTTCTCGAGCTCATTGTTGTGGATTT
CTACGAAAAGGAAATTTAATTGTTGAAAATTCACATGATAAAATATTAGAGCAATTTAAT
GTTGACAATATTGATGAAGCTTTTTATCAAATTTGTTGTTTAGATGAAAGTAAAGGAATT
TTAAAAATTACTGCAAATGAAAATAATGATAATTATTTATTATGTATGGACTTCCTTGAT
AAATCTGTAAAAGATAACAAGATAATTAGATGGCAAGTGTTAAAAGGATTATTGATTAAA
GAATGGCATAGAAAGAAAATTAGTCATTCAGAAAATTTTGTTGCCTATTTGCTGCCAATT
TTTTATATGATCATTTATATGTACGCAATTGGTGGATTTCCAAATAAATTTAAATTTGGT
ATTGTCAATTATGAAACATCAGAATGTGGAAATTATCAAATCAATAATTCTATAAATTTC
AATCATTGTCAAGAAGGAAAACTTTCATGTGAAATTTTAAATAATTTGGATTATTTCGAG
ATAATTAATTATGATCAACATCAGAAAGCATATGAAGATTTTTTGAAAGGAGAAATTTTC
GGTTTTTTGATTTTTAACTCGAATTTTACAAAATCATTAACGAATGTTCTTCATATTTAT
CATACATTTGAAATTATCAGTGATCCAACTCAATATGCTTTTGGTCTGTATTTGAAATAT
AAATTATTCCTAACATTTTCTGAAGTTTTTAAAAATTTATCTACAAAATGTGAAATTATT
GGTGGTGATTTATTATCAAAATCGATGAACATCAGAGATATTATAACAAATAATTTTGAT
ATTTTCATTATGAATTATCAATCCGTTGTGATGATTTTAATATTAATTTTTTGTATCACA
ATGTCTCATTCAGTTCTTTCAATATATGAATTTCGTGGACAAGGAATTTGGAATAGATCA
GTCATAAATGGAATGAAAATATCAGAAATTGTTCTTGCACAATTAATTCTTTTTTATTGT
AACACTTTTATTATTATTATAGAAATGCTTTTGGTTATAAAATTTGTTCTAAAAATTGAA
ATTCTTGGAAGTATTTGGCTTGTAGCTTTCATGATTTATCAAGCATCAATGGGAGGATAT
ATTGTTGGATTTTTAACTTCAATTCTTGTTGATGATATTTTTGTGCTTGCTGGATTAGCT
AATGCATTTATAGCTGTTTCTGTATCAATATCAGGTCTGGTTTGGCCAATTGAAGCAGCT
TCTATATTTATTAAACCTGTGGCTTACATTTATCCTGTTAGTTTATCTGGAATTGCATTA
AGAGAAATTATTTTTAAAGGTTCAAATTTATATCATTTTAGAGTTCAAATTGCTTTAATT
TATATAATTGTTTGTGGTTTAATTTTAAGCTTTGTTTCTTATGTTTTATTAAAATGGAGA
AAATTTACGTCAAATTAA
>g9384.t1 Gene=g9384 Length=685
MHFSLKLFEMSSIQVRKLSKNYQEFGKNSQNILCNFNLTIKYGSIYSLVGSSGCGKTTFL
NCLLAMQKIDEGEIKIFNQQVKFPNLKSLSKLIGFMPQHIALASQLTINETFHYFASLQL
IDDKTLKERSKMLCDLLCLPSKDSLIGKISNGQQRRVSFAVAVLHDPKLLILDEPTVGLD
CEIRQRIWKFLHQQSSEKNITILFTTQYLTEVSRAHCCGFLRKGNLIVENSHDKILEQFN
VDNIDEAFYQICCLDESKGILKITANENNDNYLLCMDFLDKSVKDNKIIRWQVLKGLLIK
EWHRKKISHSENFVAYLLPIFYMIIYMYAIGGFPNKFKFGIVNYETSECGNYQINNSINF
NHCQEGKLSCEILNNLDYFEIINYDQHQKAYEDFLKGEIFGFLIFNSNFTKSLTNVLHIY
HTFEIISDPTQYAFGLYLKYKLFLTFSEVFKNLSTKCEIIGGDLLSKSMNIRDIITNNFD
IFIMNYQSVVMILILIFCITMSHSVLSIYEFRGQGIWNRSVINGMKISEIVLAQLILFYC
NTFIIIIEMLLVIKFVLKIEILGSIWLVAFMIYQASMGGYIVGFLTSILVDDIFVLAGLA
NAFIAVSVSISGLVWPIEAASIFIKPVAYIYPVSLSGIALREIIFKGSNLYHFRVQIALI
YIIVCGLILSFVSYVLLKWRKFTSN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 24 | g9384.t1 | CDD | cd03230 | ABC_DR_subfamily_A | 13 | 226 | 1.05096E-44 |
| 8 | g9384.t1 | Gene3D | G3DSA:3.40.50.300 | - | 6 | 258 | 1.8E-53 |
| 4 | g9384.t1 | PANTHER | PTHR43038 | ATP-BINDING CASSETTE, SUB-FAMILY H, MEMBER 1 | 10 | 253 | 2.5E-104 |
| 6 | g9384.t1 | PANTHER | PTHR43038:SF2 | RH61964P | 10 | 253 | 2.5E-104 |
| 3 | g9384.t1 | PANTHER | PTHR43038 | ATP-BINDING CASSETTE, SUB-FAMILY H, MEMBER 1 | 290 | 678 | 2.5E-104 |
| 5 | g9384.t1 | PANTHER | PTHR43038:SF2 | RH61964P | 290 | 678 | 2.5E-104 |
| 2 | g9384.t1 | Pfam | PF00005 | ABC transporter | 35 | 176 | 7.7E-27 |
| 1 | g9384.t1 | Pfam | PF12698 | ABC-2 family transporter protein | 316 | 669 | 6.7E-14 |
| 14 | g9384.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 312 | - |
| 23 | g9384.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 313 | 331 | - |
| 9 | g9384.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 332 | 488 | - |
| 22 | g9384.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 489 | 511 | - |
| 13 | g9384.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 512 | 530 | - |
| 17 | g9384.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 531 | 553 | - |
| 10 | g9384.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 554 | 564 | - |
| 18 | g9384.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 565 | 587 | - |
| 16 | g9384.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 588 | 592 | - |
| 20 | g9384.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 593 | 615 | - |
| 12 | g9384.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 616 | 626 | - |
| 21 | g9384.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 627 | 645 | - |
| 15 | g9384.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 646 | 656 | - |
| 19 | g9384.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 657 | 677 | - |
| 11 | g9384.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 678 | 685 | - |
| 33 | g9384.t1 | ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 13 | 248 | 18.041 |
| 32 | g9384.t1 | SMART | SM00382 | AAA_5 | 42 | 245 | 1.0E-7 |
| 7 | g9384.t1 | SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 13 | 240 | 1.84E-47 |
| 25 | g9384.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 313 | 335 | - |
| 31 | g9384.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 489 | 511 | - |
| 26 | g9384.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 531 | 553 | - |
| 28 | g9384.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 566 | 588 | - |
| 29 | g9384.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 593 | 615 | - |
| 30 | g9384.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 627 | 645 | - |
| 27 | g9384.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 655 | 677 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005524 | ATP binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed