Gene loci information

Transcript annotation

  • This transcript has been annotated as Probable cytochrome P450 9f2.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g9387 g9387.t2 TTS g9387.t2 2429544 2429544
chr_1 g9387 g9387.t2 isoform g9387.t2 2429662 2432305
chr_1 g9387 g9387.t2 exon g9387.t2.exon1 2429662 2429836
chr_1 g9387 g9387.t2 cds g9387.t2.CDS1 2429662 2429836
chr_1 g9387 g9387.t2 exon g9387.t2.exon2 2430010 2430117
chr_1 g9387 g9387.t2 cds g9387.t2.CDS2 2430010 2430117
chr_1 g9387 g9387.t2 exon g9387.t2.exon3 2430323 2430633
chr_1 g9387 g9387.t2 cds g9387.t2.CDS3 2430323 2430633
chr_1 g9387 g9387.t2 exon g9387.t2.exon4 2430693 2431291
chr_1 g9387 g9387.t2 cds g9387.t2.CDS4 2430693 2431291
chr_1 g9387 g9387.t2 exon g9387.t2.exon5 2431716 2431894
chr_1 g9387 g9387.t2 cds g9387.t2.CDS5 2431716 2431894
chr_1 g9387 g9387.t2 exon g9387.t2.exon6 2432097 2432305
chr_1 g9387 g9387.t2 cds g9387.t2.CDS6 2432097 2432305
chr_1 g9387 g9387.t2 TSS g9387.t2 2432336 2432336

Sequences

>g9387.t2 Gene=g9387 Length=1581
ATGAGTTTTGTAATTTACTTAATTGCTGCAGCAGCAACTTTTTTTGTATACAAAATTTTC
TTTCATAATAAAAATAAAAATTATTTTGCCCATAAAGGAATAAAATATGAAAAACCAAGA
GGATTATTGGCAATTATTGATATGTTTACTAAGAAAAAATCATTGCCTGATGTTGTCATG
GGATGGTACAATGATTTTAAATCGGAAAAAATTTCGGGAATTTTTGAATTTTCCCGTCCA
GTTTTTATGGTTCGCGATCCAAAATTGATAAAACAAATGGCAGTCAAAGATTTTGATTAT
TTTATGGATCATCGTGTAGTTTTGACTGAAGAAATTGATGAACTGTTTGGAAAGTCTTTA
ATTTCATTGCAAGGACAAAAATGGAAAGACATGCGTTCAACACTTTCACCAGCATTTACC
GGTCACAAAATGCGATTAATGTTTGATTTTGTAGCGAGTGTTGGTAAACAAACTGTCGAA
ACATTGAAGTGTCAAATTGATGAAGGTCGTGAAAAAGATTTTGAATTTAAAGAACTCGCA
ACAAAATTCACGGTCGATAATATTGCAAGTTGTGCTTTCGGAATTCATGTTAATAGCTTT
GCTGACCCTAAAAATGATTTTCATCGAATTGCATCAGAATTAACAAGTTCTGAAAGTTTA
ACCGTCATGCTTAAATTTACTGGTCTTTTACTTTTCCCTTGGCTTATGAAAGCTTTTAAA
ATTAGTTTTTTTAGTGAAAATATCATGAAATTCTTTAAAGAAGCAATTTTGGATACAATG
AAAACACGAGAAGAAAAAGGAATTGTCCGACATGACATGATTAATCTTCTGATGCAAGCA
AAAAAAGGAAATTTAACTCATGAAAATGAAGAAAAAACTGTTGAAGGTTTCGCAACTGTT
GAAGAATCACAGATGGGTAAAATGCAAAATAAAAGAAAATGGGACGATACAGATTTGGCT
GCACAAGCTTTGGTTTTCTTTATTGCTGGTTTTGAAACTGTTGCAACAACAATGGCTTTT
ATGGGTTATGAACTTGCAATAAATCCAGAAATTCAAAAAAAACTTTATGAAGAAATTCTT
GAAACTGAAAAAGAATTGAATGGAAAACCATTGACATATGAAAAAATTCAGACAATGAAA
TTTATGGATCAGGTTGTAAGTGAAGTTTTAAGAAAATGGCCACCATCGCCTGTTACTGAC
AGAATTTGTGTCAAAGATTATGTATTGGACTATGAAGGGAGAAAAATTACAATTGAAAAA
GACAGAAGTTTCATGATTCCTATTTGGGCATTTCATCGTGATCCAAATTATTACCGAAAT
CCTGAAAAATTTGACCCAGAAAGATTCAATGATGAAAATAGAAAAAATATTCAAGAATAC
ACATACATGCCTTTTGGTGTTGGTAAAAATTGTATTGGAAGTCGTTTCGCACTGATGGAA
GTGAAAACAATTTTCTATTATTTGTTGCTTAACTTCAGAATTGCAAAAACTGATAAAACA
AAAATTCCTCTTCAATTTAAGAGCATGTCTGTAGGTTTAAAGGTCAAAGAAGGAATTTGG
GTAGCGCTTGAACCTAAATAA

>g9387.t2 Gene=g9387 Length=526
MSFVIYLIAAAATFFVYKIFFHNKNKNYFAHKGIKYEKPRGLLAIIDMFTKKKSLPDVVM
GWYNDFKSEKISGIFEFSRPVFMVRDPKLIKQMAVKDFDYFMDHRVVLTEEIDELFGKSL
ISLQGQKWKDMRSTLSPAFTGHKMRLMFDFVASVGKQTVETLKCQIDEGREKDFEFKELA
TKFTVDNIASCAFGIHVNSFADPKNDFHRIASELTSSESLTVMLKFTGLLLFPWLMKAFK
ISFFSENIMKFFKEAILDTMKTREEKGIVRHDMINLLMQAKKGNLTHENEEKTVEGFATV
EESQMGKMQNKRKWDDTDLAAQALVFFIAGFETVATTMAFMGYELAINPEIQKKLYEEIL
ETEKELNGKPLTYEKIQTMKFMDQVVSEVLRKWPPSPVTDRICVKDYVLDYEGRKITIEK
DRSFMIPIWAFHRDPNYYRNPEKFDPERFNDENRKNIQEYTYMPFGVGKNCIGSRFALME
VKTIFYYLLLNFRIAKTDKTKIPLQFKSMSVGLKVKEGIWVALEPK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
14 g9387.t2 Gene3D G3DSA:1.10.630.10 Cytochrome p450 17 526 9.0E-121
2 g9387.t2 PANTHER PTHR24292 CYTOCHROME P450 4 509 1.2E-186
3 g9387.t2 PANTHER PTHR24292:SF90 CYTOCHROME P450 317A1-RELATED 4 509 1.2E-186
5 g9387.t2 PRINTS PR00463 E-class P450 group I signature 318 335 2.1E-14
8 g9387.t2 PRINTS PR00385 P450 superfamily signature 329 346 3.9E-6
7 g9387.t2 PRINTS PR00463 E-class P450 group I signature 338 364 2.1E-14
10 g9387.t2 PRINTS PR00385 P450 superfamily signature 384 395 3.9E-6
4 g9387.t2 PRINTS PR00463 E-class P450 group I signature 427 451 2.1E-14
6 g9387.t2 PRINTS PR00463 E-class P450 group I signature 471 494 2.1E-14
9 g9387.t2 PRINTS PR00385 P450 superfamily signature 471 482 3.9E-6
1 g9387.t2 Pfam PF00067 Cytochrome P450 69 517 1.7E-79
16 g9387.t2 Phobius SIGNAL_PEPTIDE Signal peptide region 1 18 -
17 g9387.t2 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide. 1 2 -
18 g9387.t2 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide. 3 14 -
19 g9387.t2 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide. 15 18 -
15 g9387.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 19 526 -
13 g9387.t2 SUPERFAMILY SSF48264 Cytochrome P450 47 525 8.64E-101
12 g9387.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 4 21 -
11 g9387.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 319 341 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0020037 heme binding MF
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen MF
GO:0005506 iron ion binding MF
GO:0055114 NA NA

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed