Gene loci information

Transcript annotation

  • This transcript has been annotated as GTP-binding protein Rheb-like protein.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g9421 g9421.t1 TTS g9421.t1 2842526 2842526
chr_1 g9421 g9421.t1 isoform g9421.t1 2843032 2844292
chr_1 g9421 g9421.t1 exon g9421.t1.exon1 2843032 2843257
chr_1 g9421 g9421.t1 cds g9421.t1.CDS1 2843032 2843257
chr_1 g9421 g9421.t1 exon g9421.t1.exon2 2843318 2843535
chr_1 g9421 g9421.t1 cds g9421.t1.CDS2 2843318 2843535
chr_1 g9421 g9421.t1 exon g9421.t1.exon3 2843595 2843623
chr_1 g9421 g9421.t1 cds g9421.t1.CDS3 2843595 2843623
chr_1 g9421 g9421.t1 exon g9421.t1.exon4 2844089 2844121
chr_1 g9421 g9421.t1 cds g9421.t1.CDS4 2844089 2844121
chr_1 g9421 g9421.t1 exon g9421.t1.exon5 2844244 2844292
chr_1 g9421 g9421.t1 cds g9421.t1.CDS5 2844244 2844292
chr_1 g9421 g9421.t1 TSS g9421.t1 2844383 2844383

Sequences

>g9421.t1 Gene=g9421 Length=555
ATGAAAGGAAGAACAAGAAATTTGGCCATTATGGGATATAGAAGTGTGGGTAAATCATCG
CTTTCAATACAGTTTACCGAAGGTCAGTTTGTTGATAGTTATGATCCAACTATTGAAAGG
ACTTTTACAAAACATACGAGAATAAATAATGTGGACTATGAAATAAAGCTTGTTGATACA
GCTGGTCAAGATGAGTACTCGATTTTTCCTGCTCAATATTCTATGGATTATCATGGATAT
GTCTTAGTTTATTCAATCACAAGTCAAAAATCATTCGAAGTTATCAAAATTATTTATGAT
AAACTAGTAGATGTGATGGGAAAACCTTACGTTCCTGTTGTCTTAGTTGGAAATAAAACT
GATTTACATCAAGAACGAGCGGTGTCATTTGAGGAAGGAAAACGTACTGCTGAATCATGG
AAAGCTGTATTTTTGGAAACGTCTGCCAAACAAAATGAATCTGTCGATGAAATCTTCCTA
CAGCTTTTACAATTAGTTGAAAAAGAAAGTAATGGAAGTAATCCACCTGCAAAGGGAAAT
TGCACTATATCTTAA

>g9421.t1 Gene=g9421 Length=184
MKGRTRNLAIMGYRSVGKSSLSIQFTEGQFVDSYDPTIERTFTKHTRINNVDYEIKLVDT
AGQDEYSIFPAQYSMDYHGYVLVYSITSQKSFEVIKIIYDKLVDVMGKPYVPVVLVGNKT
DLHQERAVSFEEGKRTAESWKAVFLETSAKQNESVDEIFLQLLQLVEKESNGSNPPAKGN
CTIS

Protein features from InterProScan

Transcript Database ID Name Start End E.value
11 g9421.t1 CDD cd04137 RheB 6 184 0.000
10 g9421.t1 Gene3D G3DSA:3.40.50.300 - 2 175 0.000
2 g9421.t1 PANTHER PTHR24070 RAS, DI-RAS, AND RHEB FAMILY MEMBERS OF SMALL GTPASE SUPERFAMILY 4 183 0.000
3 g9421.t1 PANTHER PTHR24070:SF428 RAS HOMOLOG, MTORC1-BINDING-LIKE 1 4 183 0.000
5 g9421.t1 PRINTS PR00449 Transforming protein P21 ras signature 6 27 0.000
4 g9421.t1 PRINTS PR00449 Transforming protein P21 ras signature 29 45 0.000
7 g9421.t1 PRINTS PR00449 Transforming protein P21 ras signature 46 68 0.000
6 g9421.t1 PRINTS PR00449 Transforming protein P21 ras signature 109 122 0.000
8 g9421.t1 PRINTS PR00449 Transforming protein P21 ras signature 144 166 0.000
1 g9421.t1 Pfam PF00071 Ras family 8 166 0.000
16 g9421.t1 ProSiteProfiles PS51421 small GTPase Ras family profile. 1 184 24.581
12 g9421.t1 SMART SM00173 ras_sub_4 3 169 0.000
14 g9421.t1 SMART SM00174 rho_sub_3 8 169 0.000
13 g9421.t1 SMART SM00175 rab_sub_5 10 169 0.000
9 g9421.t1 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 5 166 0.000
15 g9421.t1 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 4 159 0.000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016020 membrane CC
GO:0007165 signal transduction BP
GO:0005525 GTP binding MF
GO:0003924 GTPase activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values