Gene loci information

Transcript annotation

  • This transcript has been annotated as GTP-binding protein Rheb-like protein.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g9421 g9421.t15 TTS g9421.t15 2842526 2842526
chr_1 g9421 g9421.t15 isoform g9421.t15 2842869 2844292
chr_1 g9421 g9421.t15 exon g9421.t15.exon1 2842869 2843257
chr_1 g9421 g9421.t15 cds g9421.t15.CDS1 2843032 2843257
chr_1 g9421 g9421.t15 exon g9421.t15.exon2 2843318 2843535
chr_1 g9421 g9421.t15 cds g9421.t15.CDS2 2843318 2843535
chr_1 g9421 g9421.t15 exon g9421.t15.exon3 2843595 2843646
chr_1 g9421 g9421.t15 cds g9421.t15.CDS3 2843595 2843646
chr_1 g9421 g9421.t15 exon g9421.t15.exon4 2844240 2844292
chr_1 g9421 g9421.t15 cds g9421.t15.CDS4 2844240 2844292
chr_1 g9421 g9421.t15 TSS g9421.t15 2844383 2844383

Sequences

>g9421.t15 Gene=g9421 Length=712
ATGAAAGGAAGAACAAGAAATTTGGCCATTATGGGATATAGAAGTGTGGGTGAATTATTT
TTATTACTATTTTTAGGTCAGTTTGTTGATAGTTATGATCCAACTATTGAAAGGACTTTT
ACAAAACATACGAGAATAAATAATGTGGACTATGAAATAAAGCTTGTTGATACAGCTGGT
CAAGATGAGTACTCGATTTTTCCTGCTCAATATTCTATGGATTATCATGGATATGTCTTA
GTTTATTCAATCACAAGTCAAAAATCATTCGAAGTTATCAAAATTATTTATGATAAACTA
GTAGATGTGATGGGAAAACCTTACGTTCCTGTTGTCTTAGTTGGAAATAAAACTGATTTA
CATCAAGAACGAGCGGTGTCATTTGAGGAAGGAAAACGTACTGCTGAATCATGGAAAGCT
GTATTTTTGGAAACGTCTGCCAAACAAAATGAATCTGTCGATGAAATCTTCCTACAGCTT
TTACAATTAGTTGAAAAAGAAAGTAATGGAAGTAATCCACCTGCAAAGGGAAATTGCACT
ATATCTTAATTATTTTGGCATTCACAAGAACACACACACACACCATTAATGATCACCACT
CTACATTTCAATCAACTGACACATTTTAAAAGCTGGCAATAATGAAATTTAGTAATTTAA
GTTTTTATCAAAGTGTCAAACTCTGCATGATTATAAAAAAATGTTAAATAGC

>g9421.t15 Gene=g9421 Length=182
MKGRTRNLAIMGYRSVGELFLLLFLGQFVDSYDPTIERTFTKHTRINNVDYEIKLVDTAG
QDEYSIFPAQYSMDYHGYVLVYSITSQKSFEVIKIIYDKLVDVMGKPYVPVVLVGNKTDL
HQERAVSFEEGKRTAESWKAVFLETSAKQNESVDEIFLQLLQLVEKESNGSNPPAKGNCT
IS

Protein features from InterProScan

Transcript Database ID Name Start End E.value
10 g9421.t15 Gene3D G3DSA:3.40.50.300 - 2 173 7.7E-45
2 g9421.t15 PANTHER PTHR24070 RAS, DI-RAS, AND RHEB FAMILY MEMBERS OF SMALL GTPASE SUPERFAMILY 4 181 5.7E-63
3 g9421.t15 PANTHER PTHR24070:SF428 RAS HOMOLOG, MTORC1-BINDING-LIKE 1 4 181 5.7E-63
5 g9421.t15 PRINTS PR00449 Transforming protein P21 ras signature 6 27 2.2E-18
6 g9421.t15 PRINTS PR00449 Transforming protein P21 ras signature 44 66 2.2E-18
7 g9421.t15 PRINTS PR00449 Transforming protein P21 ras signature 107 120 2.2E-18
4 g9421.t15 PRINTS PR00449 Transforming protein P21 ras signature 142 164 2.2E-18
1 g9421.t15 Pfam PF00071 Ras family 8 164 7.7E-40
12 g9421.t15 Phobius SIGNAL_PEPTIDE Signal peptide region 1 31 -
13 g9421.t15 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide. 1 18 -
14 g9421.t15 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide. 19 26 -
15 g9421.t15 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide. 27 31 -
11 g9421.t15 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 32 182 -
20 g9421.t15 ProSiteProfiles PS51421 small GTPase Ras family profile. 1 182 21.49
16 g9421.t15 SMART SM00173 ras_sub_4 3 167 2.4E-59
18 g9421.t15 SMART SM00174 rho_sub_3 8 167 2.6E-6
17 g9421.t15 SMART SM00175 rab_sub_5 20 167 9.9E-12
8 g9421.t15 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 6 164 1.57E-38
9 g9421.t15 SignalP_EUK SignalP-noTM SignalP-noTM 1 31 -
19 g9421.t15 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 5 157 8.9E-17

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016020 membrane CC
GO:0007165 signal transduction BP
GO:0005525 GTP binding MF
GO:0003924 GTPase activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values