Gene loci information

Transcript annotation

  • This transcript has been annotated as GTP-binding protein Rheb-like protein.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g9421 g9421.t4 isoform g9421.t4 2842519 2844292
chr_1 g9421 g9421.t4 exon g9421.t4.exon1 2842519 2843257
chr_1 g9421 g9421.t4 TTS g9421.t4 2842526 2842526
chr_1 g9421 g9421.t4 cds g9421.t4.CDS1 2843032 2843257
chr_1 g9421 g9421.t4 exon g9421.t4.exon2 2843318 2843535
chr_1 g9421 g9421.t4 cds g9421.t4.CDS2 2843318 2843535
chr_1 g9421 g9421.t4 exon g9421.t4.exon3 2844066 2844121
chr_1 g9421 g9421.t4 cds g9421.t4.CDS3 2844066 2844121
chr_1 g9421 g9421.t4 exon g9421.t4.exon4 2844244 2844292
chr_1 g9421 g9421.t4 cds g9421.t4.CDS4 2844244 2844292
chr_1 g9421 g9421.t4 TSS g9421.t4 2844383 2844383

Sequences

>g9421.t4 Gene=g9421 Length=1062
ATGAAAGGAAGAACAAGAAATTTGGCCATTATGGGATATAGAAGTGTGGGTAAATCATCG
CTTTCAATACAGTTTACCGAAGGTAATTACATATTTCTAAAACTAATTGAAAGGACTTTT
ACAAAACATACGAGAATAAATAATGTGGACTATGAAATAAAGCTTGTTGATACAGCTGGT
CAAGATGAGTACTCGATTTTTCCTGCTCAATATTCTATGGATTATCATGGATATGTCTTA
GTTTATTCAATCACAAGTCAAAAATCATTCGAAGTTATCAAAATTATTTATGATAAACTA
GTAGATGTGATGGGAAAACCTTACGTTCCTGTTGTCTTAGTTGGAAATAAAACTGATTTA
CATCAAGAACGAGCGGTGTCATTTGAGGAAGGAAAACGTACTGCTGAATCATGGAAAGCT
GTATTTTTGGAAACGTCTGCCAAACAAAATGAATCTGTCGATGAAATCTTCCTACAGCTT
TTACAATTAGTTGAAAAAGAAAGTAATGGAAGTAATCCACCTGCAAAGGGAAATTGCACT
ATATCTTAATTATTTTGGCATTCACAAGAACACACACACACACCATTAATGATCACCACT
CTACATTTCAATCAACTGACACATTTTAAAAGCTGGCAATAATGAAATTTAGTAATTTAA
GTTTTTATCAAAGTGTCAAACTCTGCATGATTATAAAAAAATGTTAAATAGCTACTTTAT
GTGTGATAATATGTCAATGAACTATTATTGCTATTAGCTAAATATAATAATTAAATTTAG
CTTAAACAAAAAAAATTAATTTTGAGTTCATATGCATGAAGTAGCCATTTCTGTGTACAA
CTATAATTTTTCATACAACTGTTACTCACACAAAAAAAAACGCTACCTACCATAATAATT
GTCTCTTATTTTTTCAACTCTAATTTTTTAACGAAACTAGCTTTATGTAATATGGAAAAT
ATTCTTTCCAAAAATTTATTGCTAAATTGGCATTCAACATTTTTTTATTTTTGAATTTTT
AGGGCAATAAAAGTGGATTACTTGAGAAAAAAAGTATTTAAA

>g9421.t4 Gene=g9421 Length=182
MKGRTRNLAIMGYRSVGKSSLSIQFTEGNYIFLKLIERTFTKHTRINNVDYEIKLVDTAG
QDEYSIFPAQYSMDYHGYVLVYSITSQKSFEVIKIIYDKLVDVMGKPYVPVVLVGNKTDL
HQERAVSFEEGKRTAESWKAVFLETSAKQNESVDEIFLQLLQLVEKESNGSNPPAKGNCT
IS

Protein features from InterProScan

Transcript Database ID Name Start End E.value
9 g9421.t4 Gene3D G3DSA:3.40.50.300 - 2 173 0.0000000
2 g9421.t4 PANTHER PTHR24070:SF264 GTP-BINDING PROTEIN RHEB 4 181 0.0000000
3 g9421.t4 PANTHER PTHR24070 RAS, DI-RAS, AND RHEB FAMILY MEMBERS OF SMALL GTPASE SUPERFAMILY 4 181 0.0000000
5 g9421.t4 PRINTS PR00449 Transforming protein P21 ras signature 6 27 0.0000000
6 g9421.t4 PRINTS PR00449 Transforming protein P21 ras signature 44 66 0.0000000
7 g9421.t4 PRINTS PR00449 Transforming protein P21 ras signature 107 120 0.0000000
4 g9421.t4 PRINTS PR00449 Transforming protein P21 ras signature 142 164 0.0000000
1 g9421.t4 Pfam PF00071 Ras family 8 164 0.0000000
13 g9421.t4 ProSiteProfiles PS51421 small GTPase Ras family profile. 1 182 20.2940000
10 g9421.t4 SMART SM00173 ras_sub_4 3 167 0.0000000
12 g9421.t4 SMART SM00174 rho_sub_3 8 167 0.0000016
11 g9421.t4 SMART SM00175 rab_sub_5 10 167 0.0000000
8 g9421.t4 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 3 170 0.0000000
14 g9421.t4 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 4 157 0.0000000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016020 membrane CC
GO:0007165 signal transduction BP
GO:0005525 GTP binding MF
GO:0032008 positive regulation of TOR signaling BP
GO:0003924 GTPase activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values