Gene loci information

Transcript annotation

  • This transcript has been annotated as [Pyruvate dehydrogenase (acetyl-transferring)] kinase, mitochondrial.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g9428 g9428.t6 TSS g9428.t6 2861344 2861344
chr_1 g9428 g9428.t6 isoform g9428.t6 2861647 2866780
chr_1 g9428 g9428.t6 exon g9428.t6.exon1 2861647 2861710
chr_1 g9428 g9428.t6 cds g9428.t6.CDS1 2861647 2861710
chr_1 g9428 g9428.t6 exon g9428.t6.exon2 2865740 2865984
chr_1 g9428 g9428.t6 cds g9428.t6.CDS2 2865740 2865984
chr_1 g9428 g9428.t6 exon g9428.t6.exon3 2866042 2866189
chr_1 g9428 g9428.t6 cds g9428.t6.CDS3 2866042 2866189
chr_1 g9428 g9428.t6 exon g9428.t6.exon4 2866255 2866422
chr_1 g9428 g9428.t6 cds g9428.t6.CDS4 2866255 2866422
chr_1 g9428 g9428.t6 exon g9428.t6.exon5 2866490 2866780
chr_1 g9428 g9428.t6 cds g9428.t6.CDS5 2866490 2866779
chr_1 g9428 g9428.t6 TTS g9428.t6 NA NA

Sequences

>g9428.t6 Gene=g9428 Length=916
ATGTTAGATTTCTACTCTCAATTTAATCCTTCACCATTGTCTATAAAGCAATTTCTTGAT
TTCGGAATGAATGCATGCGAGCGAAAATCGTTCGTGTTTTTACGCAAAGAACTGCCCGTT
CGTTTAGCGAACATTATGAAAGAAATTGCTTTACTGCCAGACAGTCTTCTCAGAACACAG
TCGGTTGGCCTCGTTAGTAATTGGTATGCAAAAAGCTTCGAAGAAGTTCTTCAGTTTGAA
CGTTCTGAACCGACACAAAGTAATCTGGAAAAGTTCTGTTCCACACTTATCCACATTCGA
GATCGTCATGCTGATGTTGTTCAAACGATGGCTCATGGAATTATTGAAATGAAGGAAGCT
CAAAATATTGAACCAGGAATGGAAACAAGCATTCAATATTTCTTAGATCGTTTCTACATG
TCGAGAATTTCCATTCGAATGCTCATCAATCAGCACACGATCCTTTTTGGAGAGCTGCCT
CAACAGACGCATCAACAGCATGTCGGTTGCATTGAAATTGATTTCGATCCAAAAGTTGTT
GTTCGTGATGCGTATGAAAACGCAAGATATCTCTGTGATCAAAATTATTTAGGTTCACCA
GAAATTGAAATTATCGAACACAATGAAATGGAAAAGGGTCAACCAATAAAAATTGTATAT
GTGCCATCACATTTATATCACATTCTTTTTGAGTTGTTTAAAAACTCAATGAGAGCTGTT
ATGGAAACACATCAAGAAAGTGATTCAATTCCTCCGATTAAAGTAAGGATTGTAAATGGA
AAAGAAGATGTCAGTGTTAAAATTAGTGATTGCGGAGGTGGAATACCACGATCACAAGTC
GATCAACTTTTTAAGTACATGTACTCAACTGCTCCACATCCTTCAAAATCAGATGTTCAC
ACAGTTCCATTAGCTG

>g9428.t6 Gene=g9428 Length=305
MLDFYSQFNPSPLSIKQFLDFGMNACERKSFVFLRKELPVRLANIMKEIALLPDSLLRTQ
SVGLVSNWYAKSFEEVLQFERSEPTQSNLEKFCSTLIHIRDRHADVVQTMAHGIIEMKEA
QNIEPGMETSIQYFLDRFYMSRISIRMLINQHTILFGELPQQTHQQHVGCIEIDFDPKVV
VRDAYENARYLCDQNYLGSPEIEIIEHNEMEKGQPIKIVYVPSHLYHILFELFKNSMRAV
METHQESDSIPPIKVRIVNGKEDVSVKISDCGGGIPRSQVDQLFKYMYSTAPHPSKSDVH
TVPLA

Protein features from InterProScan

Transcript Database ID Name Start End E.value
8 g9428.t6 Gene3D G3DSA:1.20.140.20 - 1 167 0e+00
7 g9428.t6 Gene3D G3DSA:3.30.565.10 - 168 302 0e+00
3 g9428.t6 PANTHER PTHR11947:SF22 [PYRUVATE DEHYDROGENASE (ACETYL-TRANSFERRING)] KINASE ISOZYME 4, MITOCHONDRIAL 3 305 0e+00
4 g9428.t6 PANTHER PTHR11947 PYRUVATE DEHYDROGENASE KINASE 3 305 0e+00
1 g9428.t6 Pfam PF10436 Mitochondrial branched-chain alpha-ketoacid dehydrogenase kinase 12 172 0e+00
2 g9428.t6 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 222 293 1e-07
5 g9428.t6 SUPERFAMILY SSF69012 alpha-ketoacid dehydrogenase kinase, N-terminal domain 2 156 0e+00
6 g9428.t6 SUPERFAMILY SSF55874 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 177 284 0e+00

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0004672 protein kinase activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values