Gene loci information

Transcript annotation

  • This transcript has been annotated as [Pyruvate dehydrogenase (acetyl-transferring)] kinase, mitochondrial.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g9428 g9428.t7 TSS g9428.t7 2861344 2861344
chr_1 g9428 g9428.t7 isoform g9428.t7 2861647 2867839
chr_1 g9428 g9428.t7 exon g9428.t7.exon1 2861647 2861710
chr_1 g9428 g9428.t7 exon g9428.t7.exon2 2865740 2865984
chr_1 g9428 g9428.t7 exon g9428.t7.exon3 2866042 2866422
chr_1 g9428 g9428.t7 cds g9428.t7.CDS1 2866230 2866422
chr_1 g9428 g9428.t7 exon g9428.t7.exon4 2866490 2866780
chr_1 g9428 g9428.t7 cds g9428.t7.CDS2 2866490 2866780
chr_1 g9428 g9428.t7 exon g9428.t7.exon5 2867240 2867349
chr_1 g9428 g9428.t7 cds g9428.t7.CDS3 2867240 2867349
chr_1 g9428 g9428.t7 exon g9428.t7.exon6 2867405 2867839
chr_1 g9428 g9428.t7 cds g9428.t7.CDS4 2867405 2867542
chr_1 g9428 g9428.t7 TTS g9428.t7 2868794 2868794

Sequences

>g9428.t7 Gene=g9428 Length=1526
ATGTTAGATTTCTACTCTCAATTTAATCCTTCACCATTGTCTATAAAGCAATTTCTTGAT
TTCGGAATGAATGCATGCGAGCGAAAATCGTTCGTGTTTTTACGCAAAGAACTGCCCGTT
CGTTTAGCGAACATTATGAAAGAAATTGCTTTACTGCCAGACAGTCTTCTCAGAACACAG
TCGGTTGGCCTCGTTAGTAATTGGTATGCAAAAAGCTTCGAAGAAGTTCTTCAGTTTGAA
CGTTCTGAACCGACACAAAGTAATCTGGAAAAGTTCTGTTCCACACTTATCCACATTCGA
GATCGTCATGCTGATGTTGTTCAAACGATGGCTCATGGAATTATTGAAATGAAGGAAGCT
CAAAATATTGAACCAGGAATGGAAACAAGCATTCAATATTTCTTAGATCGTTTCTACATG
TCGAGAATTTCCATTCGAATGCTCATCAATCAGCACAGTAAGCAAGCCATGATGGTGTGA
TGGTTTGATGTGTTTGTATGAGCATTAAATTATTCATTATAGCGATCCTTTTTGGAGAGC
TGCCTCAACAGACGCATCAACAGCATGTCGGTTGCATTGAAATTGATTTCGATCCAAAAG
TTGTTGTTCGTGATGCGTATGAAAACGCAAGATATCTCTGTGATCAAAATTATTTAGGTT
CACCAGAAATTGAAATTATCGAACACAATGAAATGGAAAAGGGTCAACCAATAAAAATTG
TATATGTGCCATCACATTTATATCACATTCTTTTTGAGTTGTTTAAAAACTCAATGAGAG
CTGTTATGGAAACACATCAAGAAAGTGATTCAATTCCTCCGATTAAAGTAAGGATTGTAA
ATGGAAAAGAAGATGTCAGTGTTAAAATTAGTGATTGCGGAGGTGGAATACCACGATCAC
AAGTCGATCAACTTTTTAAGTACATGTACTCAACTGCTCCACATCCTTCAAAATCAGATG
TTCACACAGTTCCATTAGCTGGCTATGGATATGGTTTGCCTATTTCGCGTTTATATGCAA
GATACTTTCATGGTGATATTTCACTGCTTTCCTGTGAAGGTTTTGGAACTGATGCAGTGA
TTTATTTAAAACGTTTATCTGATGAGGCAAATGAATTATTGCCAATTTTTAATAAAACAA
GTTCAAGATTTTATAAGGCATCTGTTCCAGCTGGAGATTGGTCAAATCAAGTAGGTGCTT
CTCGTAAAAATAGACCCGTTATTATATGATAGTAGAAATTCATACCTATAAAATTCTATA
GTTAAAATTTAAAATTTTCTATGGAGTTTTTTTGGTGATGGTTCAGTTTATAAACGTATA
AAAAGTTTCGTTAGATTAGCTATAGAACATTTCTTCATATTGCTCGTAAAAATTATTTTT
TTGTTTGCAAAATTATTAATTTTGGTTAAAGGTGCTGTTTTGTTATTGTTGTTTCCTTTT
CCTTATAATTATTCTTTTATAAAATTGAGATTTTGTTATGTTTACATTGTTTATTTCAGA
AATATGTAACTGGATATGGTTTTTAG

>g9428.t7 Gene=g9428 Length=243
MSIKLFIIAILFGELPQQTHQQHVGCIEIDFDPKVVVRDAYENARYLCDQNYLGSPEIEI
IEHNEMEKGQPIKIVYVPSHLYHILFELFKNSMRAVMETHQESDSIPPIKVRIVNGKEDV
SVKISDCGGGIPRSQVDQLFKYMYSTAPHPSKSDVHTVPLAGYGYGLPISRLYARYFHGD
ISLLSCEGFGTDAVIYLKRLSDEANELLPIFNKTSSRFYKASVPAGDWSNQVGASRKNRP
VII

Protein features from InterProScan

Transcript Database ID Name Start End E.value
12 g9428.t7 CDD cd16929 HATPase_PDK-like 32 198 1.4456E-82
6 g9428.t7 Gene3D G3DSA:3.30.565.10 - 31 210 1.9E-50
2 g9428.t7 PANTHER PTHR11947:SF15 [PYRUVATE DEHYDROGENASE (ACETYL-TRANSFERRING)] KINASE ISOZYME 2, MITOCHONDRIAL 10 225 7.8E-82
3 g9428.t7 PANTHER PTHR11947 PYRUVATE DEHYDROGENASE KINASE 10 225 7.8E-82
1 g9428.t7 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 78 198 3.1E-14
8 g9428.t7 Phobius SIGNAL_PEPTIDE Signal peptide region 1 21 -
9 g9428.t7 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide. 1 4 -
10 g9428.t7 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide. 5 13 -
11 g9428.t7 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide. 14 21 -
7 g9428.t7 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 22 243 -
14 g9428.t7 ProSiteProfiles PS50109 Histidine kinase domain profile. 78 201 19.345
13 g9428.t7 SMART SM00387 HKATPase_4 76 201 3.8E-13
4 g9428.t7 SUPERFAMILY SSF55874 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 60 209 2.75E-29
5 g9428.t7 SignalP_EUK SignalP-noTM SignalP-noTM 1 21 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0004672 protein kinase activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values