Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Pancreatic lipase-related protein 2.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g943 g943.t3 isoform g943.t3 6990444 6994803
chr_3 g943 g943.t3 exon g943.t3.exon1 6990444 6990712
chr_3 g943 g943.t3 cds g943.t3.CDS1 6990444 6990712
chr_3 g943 g943.t3 exon g943.t3.exon2 6992591 6992623
chr_3 g943 g943.t3 cds g943.t3.CDS2 6992591 6992623
chr_3 g943 g943.t3 exon g943.t3.exon3 6992696 6992826
chr_3 g943 g943.t3 cds g943.t3.CDS3 6992696 6992819
chr_3 g943 g943.t3 exon g943.t3.exon4 6994535 6994803
chr_3 g943 g943.t3 TSS g943.t3 6995003 6995003
chr_3 g943 g943.t3 TTS g943.t3 NA NA

Sequences

>g943.t3 Gene=g943 Length=702
AAAAATAAACACACTCTCGGCAGATTGAGTTAATGTCAACAAAAAACAGCATTTGCTGTT
GAATGATGAAGGAAAAAGAAAGAAAGGTCTAAATGTTGTTATTATTGTGCAATTTCTATA
TTTTTGTGATTGTAAGAATAATAAAACTGTGATTTAAAAAAAGAGAAAAATTTATATTCA
GACATTAATTGAACATTAAAGTAAAAAGAAAAAATATTCCTATACTATAATCAGCTGATT
TAAGTACAGTTGTGATATGATTTTAAGTGTATTCAAATGATGTTGAGCTGTGCAGCTTCA
ATTGTATTAATCATTTTAAATTTGGTATCATTGGCTTTATCTGGTCCACTGGATTGGGCT
AAGGCAGCAGTTGAATTACCTTGGGCTAGAGCTGATAGAATTCCTCTTGATGTTAATCTA
CCTTGGCTTCCATTTGAAAATGAAACACGATGTTATGGTGAAATTGGCTGTTTAAATATC
ACACGTGAATGGTATCATTTAATTCATCGTCCATTTAATGTTTTTCCTCTGCCGCGAAAT
GTCATTAACACGAGATTCATCCTTTATACTGAAGAAAATCCTACAGATGGCCAACTGCTC
GTGGCCGAAGAGAAAGATACGATTTTAAATTCAAATTTTCGACCAGATCGACTGACAAAA
TTTATTATTCACGGATTTATTGACACGCCTTTAAGTACTTGG

>g943.t3 Gene=g943 Length=142
MMLSCAASIVLIILNLVSLALSGPLDWAKAAVELPWARADRIPLDVNLPWLPFENETRCY
GEIGCLNITREWYHLIHRPFNVFPLPRNVINTRFILYTEENPTDGQLLVAEEKDTILNSN
FRPDRLTKFIIHGFIDTPLSTW

Protein features from InterProScan

Transcript Database ID Name Start End E.value
11 g943.t3 Gene3D G3DSA:3.40.50.1820 - 55 142 2.5E-21
2 g943.t3 PANTHER PTHR11610:SF147 PANCREATIC LIPASE-RELATED PROTEIN 2 55 142 1.1E-19
3 g943.t3 PANTHER PTHR11610 LIPASE 55 142 1.1E-19
5 g943.t3 PRINTS PR00823 Pancreatic lipase signature 57 74 4.9E-8
4 g943.t3 PRINTS PR00823 Pancreatic lipase signature 74 85 4.9E-8
7 g943.t3 PRINTS PR00823 Pancreatic lipase signature 94 106 4.9E-8
6 g943.t3 PRINTS PR00823 Pancreatic lipase signature 112 126 4.9E-8
1 g943.t3 Pfam PF00151 Lipase 59 140 4.5E-13
13 g943.t3 Phobius SIGNAL_PEPTIDE Signal peptide region 1 22 -
14 g943.t3 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide. 1 2 -
15 g943.t3 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide. 3 14 -
16 g943.t3 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide. 15 22 -
12 g943.t3 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 23 142 -
8 g943.t3 SUPERFAMILY SSF53474 alpha/beta-Hydrolases 59 140 1.41E-8
10 g943.t3 SignalP_EUK SignalP-noTM SignalP-noTM 1 22 -
9 g943.t3 SignalP_GRAM_POSITIVE SignalP-TM SignalP-TM 1 30 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0004806 triglyceride lipase activity MF
GO:0006629 lipid metabolic process BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values