Gene loci information

Transcript annotation

  • This transcript has been annotated as Fatty acid synthase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g9440 g9440.t1 isoform g9440.t1 3064581 3072763
chr_1 g9440 g9440.t1 exon g9440.t1.exon1 3064581 3064893
chr_1 g9440 g9440.t1 cds g9440.t1.CDS1 3064581 3064893
chr_1 g9440 g9440.t1 exon g9440.t1.exon2 3065426 3065637
chr_1 g9440 g9440.t1 cds g9440.t1.CDS2 3065426 3065637
chr_1 g9440 g9440.t1 exon g9440.t1.exon3 3065696 3066794
chr_1 g9440 g9440.t1 cds g9440.t1.CDS3 3065696 3066794
chr_1 g9440 g9440.t1 exon g9440.t1.exon4 3066852 3067201
chr_1 g9440 g9440.t1 cds g9440.t1.CDS4 3066852 3067201
chr_1 g9440 g9440.t1 exon g9440.t1.exon5 3067257 3069604
chr_1 g9440 g9440.t1 cds g9440.t1.CDS5 3067257 3069604
chr_1 g9440 g9440.t1 exon g9440.t1.exon6 3069661 3069790
chr_1 g9440 g9440.t1 cds g9440.t1.CDS6 3069661 3069790
chr_1 g9440 g9440.t1 exon g9440.t1.exon7 3069849 3069939
chr_1 g9440 g9440.t1 cds g9440.t1.CDS7 3069849 3069939
chr_1 g9440 g9440.t1 exon g9440.t1.exon8 3069996 3071245
chr_1 g9440 g9440.t1 cds g9440.t1.CDS8 3069996 3071245
chr_1 g9440 g9440.t1 exon g9440.t1.exon9 3071306 3071486
chr_1 g9440 g9440.t1 cds g9440.t1.CDS9 3071306 3071486
chr_1 g9440 g9440.t1 exon g9440.t1.exon10 3071547 3071647
chr_1 g9440 g9440.t1 cds g9440.t1.CDS10 3071547 3071647
chr_1 g9440 g9440.t1 exon g9440.t1.exon11 3071701 3071989
chr_1 g9440 g9440.t1 cds g9440.t1.CDS11 3071701 3071989
chr_1 g9440 g9440.t1 exon g9440.t1.exon12 3072048 3072598
chr_1 g9440 g9440.t1 cds g9440.t1.CDS12 3072048 3072598
chr_1 g9440 g9440.t1 exon g9440.t1.exon13 3072656 3072763
chr_1 g9440 g9440.t1 cds g9440.t1.CDS13 3072656 3072763
chr_1 g9440 g9440.t1 TSS g9440.t1 NA NA
chr_1 g9440 g9440.t1 TTS g9440.t1 NA NA

Sequences

>g9440.t1 Gene=g9440 Length=7023
ATGACATCAAGTTACGAACGTCGTTTGAAATTTCGAGCAGCACCTGTGTGCCCTGATGAT
GAAGTCGTCATTTCTGGAATATCTGGCCGGTTTCCAAATTCAGCTAATGTGGCTGAGTTT
GCTTATAACCTTTATAACTCGATTGATATGGTTGATGATGCAGAAACGAGATGGAAACAC
GTCGATCCAGAAATTCCAAGACGACTCGGAAAGACCGTCAATTTGAACAAATTTGATGCT
TCTTTCTTTTCTGTTCATGGTCGACAGGCTTCAACAATGGACCCACAATGTCGCTGTCTT
TTAGAACATGCATATGAAGCCGTTCTCGATGCTGGTGTTAATCCAAAAAGTCTTCGTGGT
AGTCGTACTGGTGTTTATATTGGTTGCTGTTTTGCTGAATCTGAAGAATTTATGTTTTAT
GAAAAGACAATTAAGGATGGTTTGGGTTTAACGGGCAGTGCTCGTGCTATGTTAGCTAAT
CGTATTTCTTTTGGTATGGACCTGCGAGGGTCCAGTTTTATGGTAGATACGGCATGTAGC
TCTGCAACTTATGCACTTGATGCTGCTTTTAATGCTATTCGTAATGGTGAAATTGATGCA
GCTTTAGTTGGTGGCACAAATTTGTTATTGCATCCTCATATTACTCTACAATTTGCTAGA
TTGGGTGTTTTGAGCAAGGATGGTTTTTGTCGACCTTTAGATAAGGATGCTGCTGGTTAC
ACGAGGTCAGAAGCAATCAGCATAATATTCTTGCAAAGAAAAGCCGATGCTAAGCGTGTT
TATGCTAATTTGGTTTACTGTAAGACTAACAATGATGGTTTTAAGAAAGAAGGAATCACT
TATCCCAATGATGCGACTCAGACAAAACTCTTGGAAGAATTCTACAAAGACATTCAATTA
GATCCAAGAACTGTCGATTATGTTGAAGGTCACAGTACGGGAACAAAGGTTGGTGATCCA
CAAGAATCGAGAACACTCGATACAATTTTCTGTAAAGGTCGAAAGGAACCTCTTCTCATT
GGTGCAGTTAAATCCAACATGGGTCACAGTGAAGCAACATCTGGAATTTGTTCAATCATA
AAAGTTATTTTAATGTTTGAGAATAAACAAATTCCACCAACTATTCATTATCATGAATCT
CGATCAGATTGTGAAGCATTGATTGAAGGACGTTTGAAAGTTGTTGATAAACTTCAAGAT
TTTGATGGCAAATTAGTCAGCATTAATTCGTTTGGTTTCGGTGGCGGAAATGGTCACGCT
TGTTTCAAATCAATTGCAAATGAGAAAGCAAATAAAGGGATTCCAAATGATAGCTTACCT
CGATTAGTCACTTGGTCAGGTCGCACAGAAGAAGCAATCAATCATATCATGGAAAGTGTT
ACAGAAAGACCATTAGATGCTGAATTTGTTGCTTTGTTACAAAACACACAAACTAGCACA
ATTTCATCAAATACTTATCGTGGTTATGGAATTTTCACTCAAGATGGAACTGAAAAGAAT
GCAACAATGATTTCAAAGAGCGTTCAAAACTTTAGTTCATCAAGACGGCCAATTGTCTGG
GTTTATAGTGGAATGGGATCACAATGGTGTGGAATGGGTGCTGATTTAATGAAAATTCCT
ATCTTTGCTAATGCAATTGAAAAATGTCATACTGTACTAGCAACTAAAGGCATAAATTTG
AAAGAAATTATTACATCAAAAGATCCAAAAACATTCGAAAATATTTTGCATGCTTTCGTC
GGTATTAGTGCAATGCAAATTGGTTTGACAGACATTCTTAAAGCAATTGGAATTGAACCA
GATTATATAATTGGTCATTCATTTGGTGAATTGGGTTGTGCATATGCTGACAACTGTAGT
ACTGCTGAAGAAATGATTCTTTCTGCTTATTCACGTGGTATGGCAAGTATTGAAACAAAA
ACGATCTTTGGATCAATGGCAGCTGTTGGACTTGGTTATAATCAATTGAAAGATATGGTA
CCTGATGAAATTAAGATTGCATGTCATAACAGCTCTGATTCATGCACAATATCTGGACCA
GCTGACAAAGTTAGTGAATTTGTGGCTAAATTGAAAAGTGAAAATTATTTTGCAAAAGAA
GTTGCTTGCTCTAACATTGCATATCATAGCAAATACATAGCTGAAATGGGACCAAATCTA
CTCAATCGTCTCAAGGAAGTTCTTAAATTCCCTAAAAAACGATCAAACAAATGGATTTGC
TCAAGTGTACCAGAATCAAAATGGACTGATCTTGAAAGCCAATATTCTTCAGCTCAATAC
CACACAAATAATTTATTAAACCCAGTTTTATTTGAAGAAGCAACTACTCACTTACCAAAA
GATGCATTGACAATTGAAATTGCACCTTATGGACTATTGCAAGCTATCATGAAACGTTCA
CTTTCTGAAGGATTGCATTTCAGTTTAACTCAACGTAATAACAATGAAAATACACTTTAT
TTGTTAAATTCATTGGGAAGACTTTTCGAAAATGGAGTTGATTTTGATGCTAGCAAAATT
TATCCAGCCGTTCAATTTCCTGTGTCTAGAGGAACACCGATGATTGCACCATTGATTAAA
TGGGATCATGCTGAAGATTACTTTGTATTTAAATTTGATGAACGAATTGCAAGTGAAAAA
TGCTTTTCTGTGACTTTAATGGATCACGATTATGAATTTATTTCTGGACATGAAATTGAT
GGACGAGTTCTCTTCCCAGCTACTGGTTATCTTTATATTGTTTGGCAAGCAATGGCATAT
CAACATCGATTCCGCATTCAAGATTTTGCAATTGAATTTGAAGATGTCAAATTCAGGCGA
GCAACAACAATAACTAAAAATCAGGAAGTTGAACTTATCGTTGTCATTCAGAAAGGTACA
GGACGATTTGAAATTCTTGATGGAACTACCGCTGTCGCTACTGGTTTTGTTCGCAAAGCA
ATAGAACCAAAGATTGTAGCTCTTGAAACTCCTGAAGATTCAAATATTCCAACATTGTAT
AGTCGTGATTTCTATAAAGAATTGAGACTACGTGGATATAATTACAAGGGACTTTTCAAA
TCTGTCTATACAGCAAGAGCAGATGGTCTTCGTGGTCGAGTAAAATGGCAAGAAAATTGG
GTAGCTTTTCTTGACTGCTTATTGCAGCTGCAAATCATTGCAACTGACACACGCTCTCTT
GTATTGCCAACTGGTCTTCGCAAGTTAGTTATTGATCCACACAAACATATGGAAGCAATT
GCATCAATTGAAAGAAATGAAAAGATCATGGATGTTCATTGTTCATCAAAATTAAATGCA
TTGCATTGTGGTGGCATTGAAATGCGTGGTCTTAAAGCAAATGCTGTCAGTCGTCGTCCA
CCACCAGGTGTGCCAGTTTTAGAAAGTTATCAGTTTATTCCACATTATCCAACACCAATT
ATGAATGAAGTTGATATGTCAAGATTTTGTGTGCAATTAGCACTAGAAAATTATCCAACA
GCAAAAGTTAATTGCGTTGAAATTGATATGAATGATGGTCGAGAACCAATTATTGAATTT
ATTGGTCAAGCCATTGGCGATCTTCCATTAGTTACATCAGAGTTAACTTACTTGACATCA
AAACCACTTGAATTACCAAACATCAAAGTATCAACTGTTGATATTTCATCACTTTCAGGA
AATTCAATTGTTATTAGATCAGATTGTCTTAATGATAATAAATTTTTAGAAAGTATTGCT
CCACAATTGAATGAAAATGCTTTCATCATTTCACGTGAATCAAGTGAAAGCAAATCAGTT
AAATTTGGATCCTTACCAAATGGCTATCAAGTTTCTGCTGTTATACCAATGGAAAAAGAA
ATAATAGCTCTGATCAAGTACAATAAAATCACACCAGCATTAGCCACAAAAGTTATTAAA
ATTTCAAATAATGATGAAAAGTTTGAATGGATCACTGAACTTCAAAAAGCTATAAAAGAA
GGACCAGTTATTGCATATTCTGAGAAGGAAGAATTATCAGGAATTTTAGGTTTTGTTAAT
TGTATTCGAATGGAACCGAATGGAAATAATTTAAGATGTTTCTTCATTGATGACAATACA
GCACCACCATTTAGCCTCGATTGTCCATTTTATCATATAATTTTGAACTCACATTTAGCA
ATTAATGTTTATCGAAATGGTCAATGGGGAAGTTATAAACATATGGTATTGAAACAAGAA
AACGAACCTGCATGTTATGTCACACAATGCTATGCAAATTCACTTGTTCGCACTGACTTG
TCTTCTGTGAAATGGATTCAAGGACCAATGAGAAATACTTCAAGTGATAAAGTCACTAGA
GTTCAATATGCATCACTTAATTTCCGTGATGTTATGCTTGCTACTGGAAAATTAGCAATT
GAAACATGTGGAAAAACTCGTTTAGAGCAGCAATGTGTTCTTGGTTTTGAATTTTCTGGT
ATTTATAATAATCAAAGACGTGTTATGGGAATGATTGTTGGTGGTGCTTTATCAACACAT
GTTGAAATTGATGAAATGTTATTATGGGATGTTCCAAAAGATTGGACATTAGAACAAGCA
GCATCTGTGCCTGTTGTTTATTCCACTGTCTATGTATCATTCTTTTTAACGGCTAAAATT
CAAAAAGGAAATACAATTTTGATTCATGCAGGAAGTGGAGGTGTTGGATTAGCTGCAATT
CGCATAGCATTAGCTTATGGCTTGAAAGTTTTCACAACTGTCAGTACAGATGAAAAGAAA
GACTTTTTATTGAAAGAATTCCCACAACTTAAACGTGAACACATTGGAAATTCACGTGAT
ACAAGCTTTGAGGATATGATTATGACACAAACTGATGGCAGAGGTGTCGATTATGTTCTT
AATTCATTGTCAGAAGAAAAACTTAAAGCATCAATCAAGTGTCTTGCACAAGGTGGAAAA
TTCTTAGAAATTGGAAAATTCGATATGGCTAGTGATAATAAGATTGGTTTGGGTGATTTC
TTGAAAGAACTTTCGTTCCATGCTGTGCTTGTTGACAATTTGATTAAAGCCAGTGATGAA
GAGAAAATGGTCTTGAAGCGACTTCTTCAGAATGACTTAAATCGAGGAATAATCAAACCA
TTAAAAACAACTGTCTATAAAGCTAGTGAAATTGAACAAGCATTTAGATTTTTAGCTAGT
GGCAAGCATATTGGTAAAATTGTTCTTCAATTGCGTGAAAATGAAGAAGATGCTATGACA
ATTCCTTTGACTGTATTACCAAGAGTTTATTGCAATCCAGAACATTCTTATATTATTTCT
GGCGGTTTGGGTGGTTTTGGTCTCGAGCTTGCTGATTGGTTAGTTTTGAGAGGATGCAGA
AAACTTGTCTTGAGTTCAAGTCGTGGAATAACAAAACAATATCAAGCTTATCGTATCAAA
ATTTGGGAATCATATGGTGTGAATGTTGCTATCAATAAATCTGATATAACAACACGTTCT
GGATGTGAGCAATTGATCAAAGAAGCGATGAAACTTGGACCAGTTGGTGGCATTTTCAAT
CTTGCTGTGCTTCTTCGTGATGCTATTTTTGAAAATCAAGATTCAAAGTCGTTTGTTGAG
AGTATGGGACCAAAAGCAATTGCAACAAAATATCTTGATGAACTTTCAAGAACTTTGTGT
CCCGAGTTGCAATATTTTGTTGTCTTCTCAAGTGTTTCATGCGGTCGTGGAAATGCTGGT
CAAACGAATTATGGAATGGCTAACTCTGTAATGGAAAAAATTATGGAGCAAAGAAATAAA
TTTGGATTGCCAGCAAAAGCTATTCAATGGGGTGCAGTAGGTGAGGTCGGTTTGGTTGCT
GATATGCAAGAAGATCACAAGATTGATATGGAAATTGGTGGAACATTACAGCAAAGAATT
TCATCTTGCTTAGAAGAACTCGATCCATTGATTTTAGATTTGCAGCCAGTTGTTTCAAGC
ATGGTTGTGGCAGAAAAGAAATCGAGTGGAATTTCGAAAGGAAATATTGTTGAAACTGTC
ATGAATATAATGGGAATTCGTGACATAAAATCAATCTCACTTGAAACAACTCTCAGTGAA
ATGGGTATGGACTCATTGATGGCAGTTGAATTGAAACAAATTTTTGATCGAGAATTCGAC
ATTAATTTCTCAATGCAAGAACTTCGAACATTGAACTTTTTGAAAATCATGGAAATTGCT
CAATCAAGAGAATCAGATACAGGAGAGGAATTAAAATTGAGCGGACAAAAAGGTTATGTG
AATATTTTCGAGTTTTTATTGAAACATGTTGTTGGTTCAACGATTAATGATTCCATTGTT
CAATATCACGAAAATGCAAATATGCCAGAAAATTCTGATAGTGTTGGTTTAATAATTCCT
GGAATGGAAGGTGCTGTTTCAAATGTAATGCTTGATTTGTGCAATAAATTGAAATTTTCA
TTTTTCACTTTGAATCTAAATAATCCTGATGTTTCAAAATCAAAAACCATTGATGAATTG
TTTGAAGCTGTAAAAGAGCATGCAATGAAAGCTCTTGAAAAGTATGAGAAAATTCACATA
ATTGCACATTCATTTGGAAGTCCACTAGCAATAAAATTAGCCAAATTTTTAGAAGACTCT
GGCACAAAAGTTCTTATTACCAACATTGATGGTTCACCAGGTGTGGTTTATGAAATGGCA
AGAGTTCACTTTGAAGGCCGAACTGAAAATGAATTTTATGATTTATTATTTCAAGAATAT
TTACGACTTCTTATGAATGCTGCAGTCAATAGAAGCTTTATATTACACGCCTCACCACAG
TTGGATTATTTAGAAAATACAAAATGTGCTTTCATCAAACCTTCAGAAGATGCTGTCTTT
TGTCAAGAAGAAAAACACGATTTGGATAAATATTTTAAAAAGAGCATTGATGTTTTCAAT
TTGGAAGGAAATCATCAAAGTGTCTTAGATAATCCTAAACTTGTGACATTATCAATGAAT
TTCATGAAAAATATTATTAAATTTGGGTTTTATTTAAAATATTTCACAACTCTTGTTTCT
TGA

>g9440.t1 Gene=g9440 Length=2340
MTSSYERRLKFRAAPVCPDDEVVISGISGRFPNSANVAEFAYNLYNSIDMVDDAETRWKH
VDPEIPRRLGKTVNLNKFDASFFSVHGRQASTMDPQCRCLLEHAYEAVLDAGVNPKSLRG
SRTGVYIGCCFAESEEFMFYEKTIKDGLGLTGSARAMLANRISFGMDLRGSSFMVDTACS
SATYALDAAFNAIRNGEIDAALVGGTNLLLHPHITLQFARLGVLSKDGFCRPLDKDAAGY
TRSEAISIIFLQRKADAKRVYANLVYCKTNNDGFKKEGITYPNDATQTKLLEEFYKDIQL
DPRTVDYVEGHSTGTKVGDPQESRTLDTIFCKGRKEPLLIGAVKSNMGHSEATSGICSII
KVILMFENKQIPPTIHYHESRSDCEALIEGRLKVVDKLQDFDGKLVSINSFGFGGGNGHA
CFKSIANEKANKGIPNDSLPRLVTWSGRTEEAINHIMESVTERPLDAEFVALLQNTQTST
ISSNTYRGYGIFTQDGTEKNATMISKSVQNFSSSRRPIVWVYSGMGSQWCGMGADLMKIP
IFANAIEKCHTVLATKGINLKEIITSKDPKTFENILHAFVGISAMQIGLTDILKAIGIEP
DYIIGHSFGELGCAYADNCSTAEEMILSAYSRGMASIETKTIFGSMAAVGLGYNQLKDMV
PDEIKIACHNSSDSCTISGPADKVSEFVAKLKSENYFAKEVACSNIAYHSKYIAEMGPNL
LNRLKEVLKFPKKRSNKWICSSVPESKWTDLESQYSSAQYHTNNLLNPVLFEEATTHLPK
DALTIEIAPYGLLQAIMKRSLSEGLHFSLTQRNNNENTLYLLNSLGRLFENGVDFDASKI
YPAVQFPVSRGTPMIAPLIKWDHAEDYFVFKFDERIASEKCFSVTLMDHDYEFISGHEID
GRVLFPATGYLYIVWQAMAYQHRFRIQDFAIEFEDVKFRRATTITKNQEVELIVVIQKGT
GRFEILDGTTAVATGFVRKAIEPKIVALETPEDSNIPTLYSRDFYKELRLRGYNYKGLFK
SVYTARADGLRGRVKWQENWVAFLDCLLQLQIIATDTRSLVLPTGLRKLVIDPHKHMEAI
ASIERNEKIMDVHCSSKLNALHCGGIEMRGLKANAVSRRPPPGVPVLESYQFIPHYPTPI
MNEVDMSRFCVQLALENYPTAKVNCVEIDMNDGREPIIEFIGQAIGDLPLVTSELTYLTS
KPLELPNIKVSTVDISSLSGNSIVIRSDCLNDNKFLESIAPQLNENAFIISRESSESKSV
KFGSLPNGYQVSAVIPMEKEIIALIKYNKITPALATKVIKISNNDEKFEWITELQKAIKE
GPVIAYSEKEELSGILGFVNCIRMEPNGNNLRCFFIDDNTAPPFSLDCPFYHIILNSHLA
INVYRNGQWGSYKHMVLKQENEPACYVTQCYANSLVRTDLSSVKWIQGPMRNTSSDKVTR
VQYASLNFRDVMLATGKLAIETCGKTRLEQQCVLGFEFSGIYNNQRRVMGMIVGGALSTH
VEIDEMLLWDVPKDWTLEQAASVPVVYSTVYVSFFLTAKIQKGNTILIHAGSGGVGLAAI
RIALAYGLKVFTTVSTDEKKDFLLKEFPQLKREHIGNSRDTSFEDMIMTQTDGRGVDYVL
NSLSEEKLKASIKCLAQGGKFLEIGKFDMASDNKIGLGDFLKELSFHAVLVDNLIKASDE
EKMVLKRLLQNDLNRGIIKPLKTTVYKASEIEQAFRFLASGKHIGKIVLQLRENEEDAMT
IPLTVLPRVYCNPEHSYIISGGLGGFGLELADWLVLRGCRKLVLSSSRGITKQYQAYRIK
IWESYGVNVAINKSDITTRSGCEQLIKEAMKLGPVGGIFNLAVLLRDAIFENQDSKSFVE
SMGPKAIATKYLDELSRTLCPELQYFVVFSSVSCGRGNAGQTNYGMANSVMEKIMEQRNK
FGLPAKAIQWGAVGEVGLVADMQEDHKIDMEIGGTLQQRISSCLEELDPLILDLQPVVSS
MVVAEKKSSGISKGNIVETVMNIMGIRDIKSISLETTLSEMGMDSLMAVELKQIFDREFD
INFSMQELRTLNFLKIMEIAQSRESDTGEELKLSGQKGYVNIFEFLLKHVVGSTINDSIV
QYHENANMPENSDSVGLIIPGMEGAVSNVMLDLCNKLKFSFFTLNLNNPDVSKSKTIDEL
FEAVKEHAMKALEKYEKIHIIAHSFGSPLAIKLAKFLEDSGTKVLITNIDGSPGVVYEMA
RVHFEGRTENEFYDLLFQEYLRLLMNAAVNRSFILHASPQLDYLENTKCAFIKPSEDAVF
CQEEKHDLDKYFKKSIDVFNLEGNHQSVLDNPKLVTLSMNFMKNIIKFGFYLKYFTTLVS

Protein features from InterProScan

Transcript Database ID Name Start End E.value
28 g9440.t1 CDD cd00833 PKS 20 401 1.93609E-136
29 g9440.t1 CDD cd05195 enoyl_red 1440 1729 8.75739E-107
27 g9440.t1 CDD cd08954 KR_1_FAS_SDR_x 1740 1984 4.06916E-57
20 g9440.t1 Gene3D G3DSA:3.40.47.10 - 20 423 2.6E-130
25 g9440.t1 Gene3D G3DSA:3.30.70.3290 - 439 868 9.5E-173
23 g9440.t1 Gene3D G3DSA:3.40.366.10 - 514 832 9.5E-173
26 g9440.t1 Gene3D G3DSA:3.10.129.110 - 879 1121 1.3E-76
19 g9440.t1 Gene3D G3DSA:3.40.50.720 - 1305 1983 1.8E-286
22 g9440.t1 Gene3D G3DSA:3.90.180.10 - 1399 1749 1.8E-286
21 g9440.t1 Gene3D G3DSA:1.10.1200.10 - 1990 2072 4.5E-18
24 g9440.t1 Gene3D G3DSA:3.40.50.1820 - 2110 2327 2.7E-8
9 g9440.t1 PANTHER PTHR43775 FATTY ACID SYNTHASE 1 2316 0.0
10 g9440.t1 PANTHER PTHR43775:SF23 FATTY ACID SYNTHASE 3 1 2316 0.0
4 g9440.t1 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 20 257 1.5E-61
1 g9440.t1 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 261 377 2.5E-35
8 g9440.t1 Pfam PF16197 Ketoacyl-synthetase C-terminal extension 382 491 3.2E-27
6 g9440.t1 Pfam PF00698 Acyl transferase domain 519 803 4.1E-65
3 g9440.t1 Pfam PF14765 Polyketide synthase dehydratase 878 1087 5.4E-18
7 g9440.t1 Pfam PF13602 Zinc-binding dehydrogenase 1594 1729 4.4E-15
2 g9440.t1 Pfam PF08659 KR domain 1756 1934 9.3E-41
5 g9440.t1 Pfam PF00550 Phosphopantetheine attachment site 1997 2048 2.7E-7
30 g9440.t1 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 170 186 -
36 g9440.t1 ProSiteProfiles PS50075 Carrier protein (CP) domain profile. 1987 2067 10.414
34 g9440.t1 SMART SM00825 Beta-ketoacyl synthase 22 421 2.3E-95
32 g9440.t1 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 521 814 4.5E-21
31 g9440.t1 SMART SM00829 PKS_ER_names_mod 1418 1729 3.6E-118
35 g9440.t1 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 1755 1936 3.4E-21
33 g9440.t1 SMART SM00823 Phosphopantetheine attachment site 1993 2051 0.0014
13 g9440.t1 SUPERFAMILY SSF53901 Thiolase-like 17 423 7.25E-63
12 g9440.t1 SUPERFAMILY SSF52151 FabD/lysophospholipase-like 518 803 2.04E-36
18 g9440.t1 SUPERFAMILY SSF55048 Probable ACP-binding domain of malonyl-CoA ACP transacylase 644 701 1.31E-7
16 g9440.t1 SUPERFAMILY SSF50129 GroES-like 1421 1543 6.6E-14
15 g9440.t1 SUPERFAMILY SSF51735 NAD(P)-binding Rossmann-fold domains 1514 1678 1.22E-36
14 g9440.t1 SUPERFAMILY SSF51735 NAD(P)-binding Rossmann-fold domains 1756 1947 7.43E-27
17 g9440.t1 SUPERFAMILY SSF47336 ACP-like 1996 2049 5.5E-9
11 g9440.t1 SUPERFAMILY SSF53474 alpha/beta-Hydrolases 2117 2312 1.1E-12

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0031177 phosphopantetheine binding MF
GO:0016746 acyltransferase activity MF
GO:0004315 3-oxoacyl-[acyl-carrier-protein] synthase activity MF
GO:0016740 transferase activity MF
GO:0006633 fatty acid biosynthetic process BP
GO:0016491 oxidoreductase activity MF

KEGG

Orthology

Pathway

This gene does not belong to any pathways.

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed